Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MON37_RS00120 Genome accession   NZ_CP094242
Coordinates   23555..23854 (+) Length   99 a.a.
NCBI ID   WP_039408788.1    Uniprot ID   A0A0C1E456
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18555..28854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS00120 (MON37_00120) comE 23555..23854 (+) 300 WP_039408788.1 helix-hairpin-helix domain-containing protein Machinery gene
  MON37_RS00125 (MON37_00125) - 24027..24170 (-) 144 Protein_19 IS481 family transposase -
  MON37_RS00130 (MON37_00130) - 24289..25794 (-) 1506 WP_082013643.1 hypothetical protein -
  MON37_RS00135 (MON37_00135) - 26083..26718 (-) 636 WP_039408797.1 hypothetical protein -
  MON37_RS00140 (MON37_00140) - 26718..27149 (-) 432 WP_039408799.1 hypothetical protein -
  MON37_RS00145 (MON37_00145) - 27162..28280 (-) 1119 WP_039408802.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10272.02 Da        Isoelectric Point: 10.6262

>NTDB_id=668328 MON37_RS00120 WP_039408788.1 23555..23854(+) (comE) [Morococcus cerebrosus strain CIP 81.93]
MKKFLFAALSVLTASLSLAAVNINTASPSELEALPGIGPAKAKAIADYRQQHGAFKSVEELKNVKGIGEGIFSKLKTEAT
VAPAPANPKAKNAVPLSKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=668328 MON37_RS00120 WP_039408788.1 23555..23854(+) (comE) [Morococcus cerebrosus strain CIP 81.93]
ATGAAAAAATTCCTCTTTGCCGCACTCTCCGTTCTGACCGCCTCGCTGTCGCTGGCAGCCGTCAACATCAATACCGCTTC
CCCGTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCGAAAGCCATTGCGGACTACCGTCAGCAGCATGGTG
CCTTCAAATCAGTGGAAGAGCTCAAAAACGTTAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGACCGAAGCAACC
GTCGCTCCCGCACCTGCCAACCCAAAAGCTAAAAACGCCGTCCCATTATCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1E456

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  comE Neisseria gonorrhoeae MS11

60

100

0.606
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

81.818

0.434
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

86.869

0.394

Multiple sequence alignment