Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MON40_RS02425 Genome accession   NZ_CP094241
Coordinates   517525..518388 (-) Length   287 a.a.
NCBI ID   WP_003780212.1    Uniprot ID   A0AA36UG90
Organism   Neisseria macacae ATCC 33926     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512525..523388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS02400 (MON40_02400) - 514062..514928 (-) 867 WP_003757139.1 hypothetical protein -
  MON40_RS02405 (MON40_02405) - 514961..515812 (-) 852 WP_003757138.1 mechanosensitive ion channel family protein -
  MON40_RS02410 (MON40_02410) - 516116..516451 (+) 336 WP_003757137.1 hypothetical protein -
  MON40_RS02415 (MON40_02415) yacG 516654..516839 (-) 186 WP_003763805.1 DNA gyrase inhibitor YacG -
  MON40_RS02420 (MON40_02420) coaE 516894..517523 (-) 630 WP_003780213.1 dephospho-CoA kinase -
  MON40_RS02425 (MON40_02425) pilD 517525..518388 (-) 864 WP_003780212.1 A24 family peptidase Machinery gene
  MON40_RS02430 (MON40_02430) pilG 518390..519631 (-) 1242 WP_039863289.1 type II secretion system F family protein Machinery gene
  MON40_RS02435 (MON40_02435) pilF 519703..521382 (-) 1680 WP_003757129.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MON40_RS02440 (MON40_02440) bamE 521907..522380 (-) 474 WP_003757128.1 outer membrane protein assembly factor BamE -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31345.64 Da        Isoelectric Point: 8.3248

>NTDB_id=668298 MON40_RS02425 WP_003780212.1 517525..518388(-) (pilD) [Neisseria macacae ATCC 33926]
MLESLDTLAPFAIPLSVVVGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLQLELTEEEQQPFNLMKPDSRCPKCHAPVKA
WQNIPIVSYLMLGGKCGACKTPISIRYPLIELLTGILFGVVAWQYGWTMAAFGGLILTALLIALTFIDADTQYLPDSLTL
PLIWLGLLFNLNGTFVPLKSAVLGAVFGYMSLWLLCFIYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLVFMAALIGL
IGAIIGRVAKGQYFAFGPSLAIAGWIILVANEPVHRAVTWWLTKSGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=668298 MON40_RS02425 WP_003780212.1 517525..518388(-) (pilD) [Neisseria macacae ATCC 33926]
ATGTTGGAGTCTTTGGATACATTAGCACCATTTGCTATTCCATTATCTGTCGTTGTTGGTTTGTTGATCGGAAGTTTCCT
TAATGTTGTCATTTATCGCGTTCCTGTCATGATGGAACGCGGCTGGACCCAGTTTGCGAAAGAGCATTTGCAACTTGAAT
TAACGGAAGAAGAGCAGCAACCATTCAATTTGATGAAACCGGATTCACGCTGCCCTAAGTGTCATGCTCCGGTAAAGGCT
TGGCAAAATATTCCGATTGTCAGTTATCTGATGCTTGGCGGTAAATGTGGTGCGTGTAAAACGCCCATCAGCATCCGTTA
TCCCTTAATCGAATTATTGACCGGTATATTGTTTGGCGTAGTGGCGTGGCAATATGGCTGGACGATGGCTGCATTTGGCG
GTTTGATATTGACTGCGCTATTGATTGCATTGACCTTTATCGATGCGGATACTCAATATTTACCCGACAGCCTGACCCTG
CCGTTGATATGGTTAGGTTTGCTGTTTAATTTGAATGGCACATTCGTGCCGTTGAAATCCGCCGTTTTAGGTGCAGTTTT
CGGCTATATGAGCTTATGGCTGTTGTGTTTTATCTATAAGCTTTTGACTGGAAAAATCGGTATGGGTAACGGCGATTTTA
AATTGCTGGCTGCACTAGGTGCATGGCTTGGGGTCGGCATTTTACCTGTATTAGTCTTTATGGCAGCGTTAATTGGTCTG
ATTGGTGCGATTATCGGACGGGTTGCCAAAGGACAATATTTTGCTTTCGGTCCGAGTTTGGCTATTGCCGGCTGGATTAT
TTTGGTAGCTAACGAGCCGGTACATCGTGCCGTCACTTGGTGGCTGACCAAATCAGGGTTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)

Type IV leader peptidase family (Peptidase_A24)

(135-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

73.852

98.606

0.728
  pilD Vibrio cholerae strain A1552

47.636

95.819

0.456
  pilD Acinetobacter nosocomialis M2

49.425

90.941

0.449
  pilD Acinetobacter baumannii D1279779

49.042

90.941

0.446
  pilD Vibrio campbellii strain DS40M4

44.364

95.819

0.425

Multiple sequence alignment