Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPZ60_RS24920 Genome accession   NZ_CP094238
Coordinates   5410514..5411062 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas sp. 7D-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5390867..5410386 5410514..5411062 flank 128


Gene organization within MGE regions


Location: 5390867..5411062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPZ60_RS24835 (MPZ60_24835) - 5390867..5391475 (-) 609 WP_242881935.1 hypothetical protein -
  MPZ60_RS24840 (MPZ60_24840) istB 5391852..5392667 (-) 816 WP_015585970.1 IS21-like element helper ATPase IstB -
  MPZ60_RS24845 (MPZ60_24845) istA 5392660..5394168 (-) 1509 WP_024310277.1 IS21-like element ISCsp4 family transposase -
  MPZ60_RS24850 (MPZ60_24850) istA 5394763..5396271 (+) 1509 WP_024310277.1 IS21-like element ISCsp4 family transposase -
  MPZ60_RS24855 (MPZ60_24855) istB 5396264..5397079 (+) 816 WP_015585970.1 IS21-like element helper ATPase IstB -
  MPZ60_RS24860 (MPZ60_24860) - 5397214..5398185 (-) 972 WP_370688535.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  MPZ60_RS24865 (MPZ60_24865) - 5398223..5399830 (-) 1608 WP_242881936.1 thiamine pyrophosphate-binding protein -
  MPZ60_RS24870 (MPZ60_24870) - 5399883..5401082 (-) 1200 WP_242881937.1 pyridoxal phosphate-dependent aminotransferase -
  MPZ60_RS24875 (MPZ60_24875) - 5401158..5402084 (+) 927 WP_242881938.1 LysR family transcriptional regulator -
  MPZ60_RS24880 (MPZ60_24880) - 5402115..5402996 (-) 882 WP_242881939.1 LysR family transcriptional regulator -
  MPZ60_RS24885 (MPZ60_24885) argE 5403051..5404217 (-) 1167 WP_242881940.1 acetylornithine deacetylase -
  MPZ60_RS24890 (MPZ60_24890) - 5404214..5404732 (-) 519 WP_242881941.1 tripartite tricarboxylate transporter substrate-binding protein -
  MPZ60_RS24895 (MPZ60_24895) istA 5404802..5406310 (+) 1509 WP_024310277.1 IS21-like element ISCsp4 family transposase -
  MPZ60_RS24900 (MPZ60_24900) istB 5406303..5407118 (+) 816 WP_015585970.1 IS21-like element helper ATPase IstB -
  MPZ60_RS24905 (MPZ60_24905) - 5407135..5407518 (-) 384 WP_242881942.1 hypothetical protein -
  MPZ60_RS24910 (MPZ60_24910) - 5407511..5409085 (-) 1575 WP_242881943.1 site-specific integrase -
  MPZ60_RS24915 (MPZ60_24915) - 5409085..5410386 (-) 1302 WP_003064696.1 tyrosine-type recombinase/integrase -
  MPZ60_RS24920 (MPZ60_24920) ssb 5410514..5411062 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=668248 MPZ60_RS24920 WP_003064700.1 5410514..5411062(-) (ssb) [Comamonas sp. 7D-2]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=668248 MPZ60_RS24920 WP_003064700.1 5410514..5411062(-) (ssb) [Comamonas sp. 7D-2]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGAGAAAACCGCGAAGCCACCGAGTGGC
ACCGTGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCTGATGCCATGCA
GATGCTGGGCAGCCGCCAGGGTGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCTATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment