Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA23_RS16630 Genome accession   NZ_CP108878
Coordinates   3751211..3752188 (-) Length   325 a.a.
NCBI ID   WP_266688820.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00822     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746211..3757188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA23_RS16615 (OHA23_16605) - 3746617..3748749 (+) 2133 WP_330434920.1 alpha/beta fold hydrolase -
  OHA23_RS16620 (OHA23_16610) - 3748774..3749775 (-) 1002 WP_266688818.1 hypothetical protein -
  OHA23_RS16625 (OHA23_16615) - 3749974..3751221 (-) 1248 WP_266688819.1 dipeptide ABC transporter ATP-binding protein -
  OHA23_RS16630 (OHA23_16620) amiE 3751211..3752188 (-) 978 WP_266688820.1 ABC transporter ATP-binding protein Regulator
  OHA23_RS16635 (OHA23_16625) - 3752202..3753176 (-) 975 WP_266621507.1 ABC transporter permease -
  OHA23_RS16640 (OHA23_16630) - 3753169..3754092 (-) 924 WP_266490769.1 ABC transporter permease -
  OHA23_RS16645 (OHA23_16635) - 3754217..3755848 (-) 1632 WP_330434921.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35906.88 Da        Isoelectric Point: 6.8280

>NTDB_id=668121 OHA23_RS16630 WP_266688820.1 3751211..3752188(-) (amiE) [Streptomyces sp. NBC_00822]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKISGGEILFKDRDLLKMKK
DERRKIRGQEMAMIFQDALSSLNPVLSVGEQLGEMFVVHRGMSHKDARLKAVELMDRVRIPAAKERVGNFPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVESAPVHE
IYRAPAHPYTKGLLRSIPRLDQKGRELYAIKGLPPNLLHIPPGCAFNPRCPMAQEICRGEVPPLFEVAEHRESACYFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=668121 OHA23_RS16630 WP_266688820.1 3751211..3752188(-) (amiE) [Streptomyces sp. NBC_00822]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGCGACGGCGTCGCCAAGGCTGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACACTGGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACCGCCCAGGCCGTCATGG
GCATCCTCGACATGCCCCCCGGGAAGATCAGCGGCGGCGAGATCCTCTTCAAGGACCGCGACCTGCTGAAGATGAAGAAG
GACGAGCGCCGGAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTCTCCTCCCTCAACCCCGTGCTCAG
CGTGGGGGAGCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCCCACAAGGACGCCAGGCTGAAGGCCGTCGAGC
TGATGGACCGGGTCCGCATCCCGGCGGCCAAGGAACGCGTCGGGAACTTCCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCGTCGCTGATCATCGCGGACGAACCCACCACCGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCCGAGCTCCAGCGCGAGCTGAACATGGGCCTGATCCTGATCACCCACGACC
TGGGCGTGGTCGCGGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGTCCGCCCCGGTCCACGAG
ATCTACCGGGCACCCGCCCACCCGTACACCAAGGGCCTGCTCCGGTCGATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCCC
AGGAGATCTGCCGGGGCGAGGTGCCCCCGCTGTTCGAGGTGGCCGAGCACCGCGAGAGCGCCTGCTACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.729

98.769

0.462
  amiE Streptococcus thermophilus LMG 18311

46.417

98.769

0.458
  amiE Streptococcus thermophilus LMD-9

46.417

98.769

0.458
  oppD Streptococcus mutans UA159

46.519

97.231

0.452

Multiple sequence alignment