Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   MP387_RS07710 Genome accession   NZ_CP094226
Coordinates   1585718..1587685 (-) Length   655 a.a.
NCBI ID   WP_242746076.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580718..1592685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS07695 (MP387_07695) cps4B 1581245..1581976 (-) 732 WP_096753697.1 capsular polysaccharide biosynthesis protein Cps4B -
  MP387_RS07700 (MP387_07700) - 1581978..1583423 (-) 1446 WP_000091218.1 LCP family protein -
  MP387_RS07705 (MP387_07705) amiA3 1583608..1585569 (-) 1962 WP_242746062.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS07710 (MP387_07710) amiA 1585718..1587685 (-) 1968 WP_242746076.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS07715 (MP387_07715) - 1587855..1589465 (-) 1611 WP_242746078.1 alpha-glucosidase -
  MP387_RS07720 (MP387_07720) - 1589618..1591102 (+) 1485 WP_242746080.1 DUF1846 domain-containing protein -
  MP387_RS07725 (MP387_07725) - 1591194..1591676 (+) 483 WP_000032556.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72395.87 Da        Isoelectric Point: 5.0129

>NTDB_id=668121 MP387_RS07710 WP_242746076.1 1585718..1587685(-) (amiA) [Streptococcus oralis strain 1648]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSAVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQGKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=668121 MP387_RS07710 WP_242746076.1 1585718..1587685(-) (amiA) [Streptococcus oralis strain 1648]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAAACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAAGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTGCCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGAGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACTAGCTACTACCTCACTGTTAATGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTTGGTGAAAAAACCTTTGGAGAGTTGGCGCAGGCAGAGCTTGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGAAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCTGCCTTTGCTAAAGCCAAGGAAGAATTGCAGGG
CAAGGGAGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCAGTTCAACAAACCAACTCAC
TCAAGCAGTCAATCGAATCATCGCTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAAAAAATT
AGCATTACGTCTCAAGCCAAGGTGCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACTTAAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCACTCGTGGAAAAGATC
CAGAAGTGATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCCGCAGCTGAAACAAGCGACCTCAAT
AAGCGTTACGAAAAATATGCCAAAGCTCAAGCTTGGGTGTCAGACAGCTCGCTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGTACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGCGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAGACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment