Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   MP387_RS07705 Genome accession   NZ_CP094226
Coordinates   1583608..1585569 (-) Length   653 a.a.
NCBI ID   WP_242746062.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578608..1590569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS07685 (MP387_07685) - 1579842..1580534 (-) 693 WP_084917687.1 tyrosine-protein kinase -
  MP387_RS07690 (MP387_07690) cpsC 1580544..1581236 (-) 693 WP_242746059.1 capsular polysaccharide biosynthesis protein CpsC -
  MP387_RS07695 (MP387_07695) cps4B 1581245..1581976 (-) 732 WP_096753697.1 capsular polysaccharide biosynthesis protein Cps4B -
  MP387_RS07700 (MP387_07700) - 1581978..1583423 (-) 1446 WP_000091218.1 LCP family protein -
  MP387_RS07705 (MP387_07705) amiA3 1583608..1585569 (-) 1962 WP_242746062.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS07710 (MP387_07710) amiA 1585718..1587685 (-) 1968 WP_242746076.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS07715 (MP387_07715) - 1587855..1589465 (-) 1611 WP_242746078.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72998.29 Da        Isoelectric Point: 4.8329

>NTDB_id=668120 MP387_RS07705 WP_242746062.1 1583608..1585569(-) (amiA3) [Streptococcus oralis strain 1648]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSADGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNREKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMKLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=668120 MP387_RS07705 WP_242746062.1 1583608..1585569(-) (amiA3) [Streptococcus oralis strain 1648]
ATGATCAAAATGAAAAAAAGACTGATTGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCTGCATGTGGACAGTC
CAATACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTCCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGCTAGAAAATGACAGCTACGGGAACCTCGTGCCTGCTCTTGCA
GAGGATTGGTCAGTTTCAGCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCTGCGGACAACAAGGGGCAAGCCATGG
ATCTGATTCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTTGGTGTCAAA
GCCTTGGATGACTATACGGTTGAGTACACTTTGACACGACCAGAACCTTATTGGAACTCTAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTTTTGAAATCAAAAGATAAAGACTTTGGTACCTTGACACCAGACAGCATCCTTTATAACG
GTCCATATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCCTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAATTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GCTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAACAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGAATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCTAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GACGCTCAAGATGCATACTTCAACAGGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACAAATAAAAATGCGGTCTCTGGTATGAATTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTACCTAGATCCCTTCAATGCTGAAACTGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTCGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAACAAAGATGTTGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTAGGTATCAAGGGTGACGGAAATAATTATAAGTACA
TGAAATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCCAAGGCTAAGTGGGAAGCAGAAAGTAAAAAAGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.598

100

0.519
  amiA3 Streptococcus thermophilus LMG 18311

51.446

100

0.518
  amiA Streptococcus salivarius strain HSISS4

50.762

100

0.51

Multiple sequence alignment