Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Asbog_RS12660 Genome accession   NZ_AP014690
Coordinates   2886041..2886586 (+) Length   181 a.a.
NCBI ID   WP_023979306.1    Uniprot ID   A0AAN4U2X2
Organism   Asaia bogorensis NBRC 16594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2881041..2891586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Asbog_RS12650 (Asbog_02552) - 2882002..2882946 (-) 945 WP_062165403.1 glyoxylate/hydroxypyruvate reductase A -
  Asbog_RS12655 (Asbog_02553) uvrA 2882943..2885873 (-) 2931 WP_062165404.1 excinuclease ABC subunit UvrA -
  Asbog_RS12660 (Asbog_02554) ssb 2886041..2886586 (+) 546 WP_023979306.1 single-stranded DNA-binding protein Machinery gene
  Asbog_RS12665 (Asbog_02555) gyrA 2886706..2889510 (+) 2805 WP_231944719.1 DNA gyrase subunit A -
  Asbog_RS12670 (Asbog_02556) coaD 2889494..2890021 (+) 528 WP_062165406.1 pantetheine-phosphate adenylyltransferase -
  Asbog_RS12675 (Asbog_02557) - 2890067..2890540 (+) 474 WP_062165407.1 peptidylprolyl isomerase -
  Asbog_RS14595 - 2891052..2891228 (+) 177 WP_171840704.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19574.34 Da        Isoelectric Point: 5.9939

>NTDB_id=66811 Asbog_RS12660 WP_023979306.1 2886041..2886586(+) (ssb) [Asaia bogorensis NBRC 16594]
MAGSVNKVILVGNLGRDPETRNAQSGAKIVNLTVATSESWNDRASGERKERTEWHRVVIFNERLADVAERFLRKGRKVYV
EGQLQTRKWTDQGGQERYTTEIVLDRFRGELTLLDNNRDGESGGGMGGGYESGPSRSYGGGNAPARSGGNGMSQSPSRNQ
GGNNGGGWDAPGGDLDDEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=66811 Asbog_RS12660 WP_023979306.1 2886041..2886586(+) (ssb) [Asaia bogorensis NBRC 16594]
ATGGCAGGAAGTGTAAACAAAGTCATTCTGGTGGGAAATCTGGGCCGCGACCCGGAAACACGCAATGCCCAGTCCGGTGC
CAAGATCGTCAACCTGACCGTTGCCACCTCCGAAAGCTGGAATGACCGCGCCTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACCGCGTCGTGATTTTCAACGAGCGTCTGGCCGATGTCGCCGAGCGTTTTCTGCGCAAGGGCCGCAAGGTCTATGTG
GAAGGCCAGCTCCAGACACGCAAATGGACCGACCAGGGCGGACAGGAGCGCTATACGACCGAAATCGTGCTTGACCGGTT
CCGTGGAGAACTCACCCTGCTCGACAATAACCGCGATGGTGAGTCCGGTGGCGGCATGGGGGGCGGCTATGAAAGCGGCC
CATCACGTTCCTATGGCGGCGGCAATGCCCCGGCTCGCAGCGGTGGCAATGGCATGAGCCAGTCTCCCTCGCGCAATCAG
GGTGGCAATAACGGCGGTGGCTGGGACGCACCAGGTGGCGATCTGGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.492
  ssb Vibrio cholerae strain A1552

45.405

100

0.464
  ssb Neisseria meningitidis MC58

40.984

100

0.414
  ssb Neisseria gonorrhoeae MS11

39.891

100

0.403

Multiple sequence alignment