Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   MP387_RS02215 Genome accession   NZ_CP094226
Coordinates   440538..441197 (-) Length   219 a.a.
NCBI ID   WP_242747364.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 435538..446197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS02185 (MP387_02185) - 435665..436231 (+) 567 WP_242747340.1 aminodeoxychorismate/anthranilate synthase component II -
  MP387_RS02190 (MP387_02190) trpD 436242..437246 (+) 1005 WP_242747342.1 anthranilate phosphoribosyltransferase -
  MP387_RS02195 (MP387_02195) trpC 437243..438010 (+) 768 WP_242747344.1 indole-3-glycerol phosphate synthase TrpC -
  MP387_RS02200 (MP387_02200) - 437997..438596 (+) 600 WP_242747352.1 phosphoribosylanthranilate isomerase -
  MP387_RS02205 (MP387_02205) trpB 438574..439797 (+) 1224 WP_242747354.1 tryptophan synthase subunit beta -
  MP387_RS02210 (MP387_02210) trpA 439790..440566 (+) 777 WP_242747362.1 tryptophan synthase subunit alpha -
  MP387_RS02215 (MP387_02215) cclA/cilC 440538..441197 (-) 660 WP_242747364.1 A24 family peptidase Machinery gene
  MP387_RS02220 (MP387_02220) - 441267..441722 (+) 456 WP_242747366.1 GNAT family N-acetyltransferase -
  MP387_RS02225 (MP387_02225) - 441825..442349 (+) 525 WP_242747368.1 thiol-disulfide isomerase -
  MP387_RS02230 (MP387_02230) - 442419..442940 (+) 522 WP_242747370.1 hypothetical protein -
  MP387_RS02235 (MP387_02235) - 443158..443361 (-) 204 WP_000102421.1 CsbD family protein -
  MP387_RS02240 (MP387_02240) - 443403..443999 (-) 597 WP_045594996.1 Asp23/Gls24 family envelope stress response protein -
  MP387_RS02245 (MP387_02245) - 444011..444181 (-) 171 WP_000454669.1 DUF2273 domain-containing protein -
  MP387_RS02250 (MP387_02250) amaP 444193..444756 (-) 564 WP_000045613.1 alkaline shock response membrane anchor protein AmaP -
  MP387_RS02255 (MP387_02255) - 444856..445092 (-) 237 WP_033630119.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24971.21 Da        Isoelectric Point: 8.1581

>NTDB_id=668095 MP387_RS02215 WP_242747364.1 440538..441197(-) (cclA/cilC) [Streptococcus oralis strain 1648]
MIDLYFFLVGSILASFLGLVIDRFPEQSIIRPASHCDSCQTRLRPLDLIPIISQVIGRFRCRYCKARYPFWYALFELGLG
ILFLAWSWGWLSLGQIILITAGSTLGIYDFRHQEYPLMVWLTFHLILMAFCGWNLVMIFFLVLGIMAHFIDIRMGAGDFL
FLASCALIFSATELLILIQFASATGILAFLLQKKKERLPFVPFLLLAACLIIFGNLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=668095 MP387_RS02215 WP_242747364.1 440538..441197(-) (cclA/cilC) [Streptococcus oralis strain 1648]
ATGATTGATCTTTATTTTTTTCTTGTTGGGAGCATTCTCGCTTCTTTCTTGGGTTTGGTCATTGACCGATTCCCTGAGCA
ATCCATTATTCGACCAGCTAGCCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTATCTCTC
AAGTAATTGGTCGCTTTCGCTGTCGCTACTGCAAGGCTCGCTATCCATTCTGGTATGCCCTCTTTGAACTCGGCTTAGGA
ATCCTCTTTCTAGCTTGGTCTTGGGGCTGGCTTTCCTTAGGTCAAATCATCCTCATCACTGCTGGCTCAACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTAATGGTTTGGCTAACTTTCCACCTAATCCTCATGGCTTTCTGTGGCTGGA
ATCTGGTTATGATTTTCTTCCTTGTCCTCGGAATCATGGCCCATTTTATCGATATTCGCATGGGCGCAGGGGATTTTCTC
TTTCTGGCTTCTTGTGCTCTCATCTTTAGCGCGACAGAATTACTGATTTTGATCCAGTTCGCTTCTGCGACGGGGATCCT
AGCTTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTGCTTGTTTGATTATTTTTG
GTAACCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

88.128

100

0.881

  cclA/cilC Streptococcus mitis NCTC 12261

86.758

100

0.868

  cclA/cilC Streptococcus pneumoniae Rx1

86.301

100

0.863

  cclA/cilC Streptococcus pneumoniae D39

86.301

100

0.863

  cclA/cilC Streptococcus pneumoniae R6

86.301

100

0.863

  cclA/cilC Streptococcus pneumoniae TIGR4

85.845

100

0.858


Multiple sequence alignment