Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG43_RS00720 | Genome accession | NZ_CP094175 |
| Coordinates | 153586..154722 (+) | Length | 378 a.a. |
| NCBI ID | WP_245030629.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe063 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 148586..159722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG43_RS00685 (MPG43_00685) | panD | 149037..149387 (+) | 351 | WP_000142212.1 | aspartate 1-decarboxylase | - |
| MPG43_RS00690 (MPG43_00690) | - | 149398..149691 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG43_RS00695 (MPG43_00695) | - | 149691..150686 (+) | 996 | WP_245031212.1 | PDZ domain-containing protein | - |
| MPG43_RS00700 (MPG43_00700) | comB6 | 150692..151747 (+) | 1056 | WP_245031213.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG43_RS00705 (MPG43_00705) | comB7 | 151763..151888 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG43_RS00710 (MPG43_00710) | comB8 | 151885..152628 (+) | 744 | WP_245030615.1 | virB8 family protein | Machinery gene |
| MPG43_RS00715 (MPG43_00715) | comB9 | 152628..153593 (+) | 966 | WP_245030617.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG43_RS00720 (MPG43_00720) | comB10 | 153586..154722 (+) | 1137 | WP_245030629.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG43_RS00725 (MPG43_00725) | - | 154792..156204 (+) | 1413 | WP_245030631.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG43_RS00730 (MPG43_00730) | gmd | 156219..157364 (+) | 1146 | WP_245030633.1 | GDP-mannose 4,6-dehydratase | - |
| MPG43_RS00735 (MPG43_00735) | - | 157357..158289 (+) | 933 | WP_245030635.1 | GDP-L-fucose synthase | - |
| MPG43_RS00740 (MPG43_00740) | hypE | 158539..159537 (-) | 999 | WP_245030637.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42035.61 Da Isoelectric Point: 9.9227
>NTDB_id=668013 MPG43_RS00720 WP_245030629.1 153586..154722(+) (comB10) [Helicobacter pylori strain Hpfe063]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=668013 MPG43_RS00720 WP_245030629.1 153586..154722(+) (comB10) [Helicobacter pylori strain Hpfe063]
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGTAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGTAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |