Detailed information NTG0668012

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG43_RS00715
• Genome accession: NZ_CP094175
• Coordinates: 152628..153593 (+)
• Length: 321 a.a.
• NCBI ID: WP_245030617.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe063
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147628..158593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG43_RS00685 (MPG43_00685)	panD	149037..149387 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG43_RS00690 (MPG43_00690)	-	149398..149691 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG43_RS00695 (MPG43_00695)	-	149691..150686 (+)	996	WP_245031212.1	PDZ domain-containing protein	-
MPG43_RS00700 (MPG43_00700)	comB6	150692..151747 (+)	1056	WP_245031213.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG43_RS00705 (MPG43_00705)	comB7	151763..151888 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG43_RS00710 (MPG43_00710)	comB8	151885..152628 (+)	744	WP_245030615.1	virB8 family protein	Machinery gene
MPG43_RS00715 (MPG43_00715)	comB9	152628..153593 (+)	966	WP_245030617.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG43_RS00720 (MPG43_00720)	comB10	153586..154722 (+)	1137	WP_245030629.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG43_RS00725 (MPG43_00725)	-	154792..156204 (+)	1413	WP_245030631.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG43_RS00730 (MPG43_00730)	gmd	156219..157364 (+)	1146	WP_245030633.1	GDP-mannose 4,6-dehydratase	-
MPG43_RS00735 (MPG43_00735)	-	157357..158289 (+)	933	WP_245030635.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36945.50 Da
• Isoelectric Point: 9.4585

>NTDB_id=668012 MPG43_RS00715 WP_245030617.1 152628..153593(+) (comB9) [Helicobacter pylori strain Hpfe063]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=668012 MPG43_RS00715 WP_245030617.1 152628..153593(+) (comB9) [Helicobacter pylori strain Hpfe063]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAAGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGATAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.272	100	0.95