Detailed information NTG0667943

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG20_RS00735
• Genome accession: NZ_CP094171
• Coordinates: 150526..151488 (+)
• Length: 320 a.a.
• NCBI ID: WP_245074390.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145526..156488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG20_RS00705 (MPG20_00705)	panD	146939..147292 (+)	354	WP_180670611.1	aspartate 1-decarboxylase	-
MPG20_RS00710 (MPG20_00710)	-	147295..147588 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
MPG20_RS00715 (MPG20_00715)	-	147588..148583 (+)	996	WP_245074876.1	PDZ domain-containing protein	-
MPG20_RS00720 (MPG20_00720)	comB6	148590..149645 (+)	1056	WP_180608952.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG20_RS00725 (MPG20_00725)	comB7	149661..149786 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG20_RS00730 (MPG20_00730)	comB8	149783..150526 (+)	744	WP_245050849.1	virB8 family protein	Machinery gene
MPG20_RS00735 (MPG20_00735)	comB9	150526..151488 (+)	963	WP_245074390.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG20_RS00740 (MPG20_00740)	comB10	151481..152617 (+)	1137	WP_245074392.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG20_RS00745 (MPG20_00745)	-	152683..154095 (+)	1413	WP_245074394.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG20_RS00750 (MPG20_00750)	gmd	154109..155254 (+)	1146	WP_245074396.1	GDP-mannose 4,6-dehydratase	-
MPG20_RS00755 (MPG20_00755)	-	155247..156179 (+)	933	WP_245074397.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36813.43 Da
• Isoelectric Point: 9.4585

>NTDB_id=667943 MPG20_RS00735 WP_245074390.1 150526..151488(+) (comB9) [Helicobacter pylori strain Hpfe0003]
MRKVLYALVGFLLVFGALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNANAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667943 MPG20_RS00735 WP_245074390.1 150526..151488(+) (comB9) [Helicobacter pylori strain Hpfe0003]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTGGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATCGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACGCTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGCTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAGTTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938