Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG20_RS00720 | Genome accession | NZ_CP094171 |
| Coordinates | 148590..149645 (+) | Length | 351 a.a. |
| NCBI ID | WP_180608952.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143590..154645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG20_RS00690 (MPG20_00690) | - | 144024..144437 (+) | 414 | WP_001022998.1 | universal stress protein | - |
| MPG20_RS00695 (MPG20_00695) | - | 144452..144727 (+) | 276 | WP_000784933.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG20_RS00700 (MPG20_00700) | - | 144727..146949 (+) | 2223 | WP_245074388.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG20_RS00705 (MPG20_00705) | panD | 146939..147292 (+) | 354 | WP_180670611.1 | aspartate 1-decarboxylase | - |
| MPG20_RS00710 (MPG20_00710) | - | 147295..147588 (+) | 294 | WP_048944407.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG20_RS00715 (MPG20_00715) | - | 147588..148583 (+) | 996 | WP_245074876.1 | PDZ domain-containing protein | - |
| MPG20_RS00720 (MPG20_00720) | comB6 | 148590..149645 (+) | 1056 | WP_180608952.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG20_RS00725 (MPG20_00725) | comB7 | 149661..149786 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG20_RS00730 (MPG20_00730) | comB8 | 149783..150526 (+) | 744 | WP_245050849.1 | virB8 family protein | Machinery gene |
| MPG20_RS00735 (MPG20_00735) | comB9 | 150526..151488 (+) | 963 | WP_245074390.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG20_RS00740 (MPG20_00740) | comB10 | 151481..152617 (+) | 1137 | WP_245074392.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG20_RS00745 (MPG20_00745) | - | 152683..154095 (+) | 1413 | WP_245074394.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39811.77 Da Isoelectric Point: 8.8165
>NTDB_id=667940 MPG20_RS00720 WP_180608952.1 148590..149645(+) (comB6) [Helicobacter pylori strain Hpfe0003]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667940 MPG20_RS00720 WP_180608952.1 148590..149645(+) (comB6) [Helicobacter pylori strain Hpfe0003]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.721 |
100 |
0.977 |