Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG832_RS10340 Genome accession   NZ_CP108873
Coordinates   2269593..2270237 (-) Length   214 a.a.
NCBI ID   WP_124718426.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00826     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2264593..2275237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG832_RS10310 (OG832_10270) - 2264930..2265697 (-) 768 WP_266691639.1 sulfite exporter TauE/SafE family protein -
  OG832_RS10315 (OG832_10275) - 2265759..2266688 (-) 930 WP_124718431.1 SPFH domain-containing protein -
  OG832_RS10320 (OG832_10280) - 2266835..2267263 (-) 429 WP_266691637.1 NfeD family protein -
  OG832_RS10325 (OG832_10285) - 2267354..2268151 (-) 798 WP_124718429.1 ABC transporter ATP-binding protein -
  OG832_RS10330 (OG832_10290) - 2268294..2269079 (+) 786 WP_266691635.1 hypothetical protein -
  OG832_RS10335 (OG832_10295) - 2269199..2269447 (-) 249 WP_259931077.1 chaplin -
  OG832_RS10340 (OG832_10300) vraR 2269593..2270237 (-) 645 WP_124718426.1 response regulator transcription factor Regulator
  OG832_RS10345 (OG832_10305) - 2270230..2271375 (-) 1146 WP_266691633.1 GAF domain-containing sensor histidine kinase -
  OG832_RS10350 (OG832_10310) - 2271871..2272641 (+) 771 WP_266691631.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23111.38 Da        Isoelectric Point: 5.1683

>NTDB_id=667940 OG832_RS10340 WP_124718426.1 2269593..2270237(-) (vraR) [Streptomyces sp. NBC_00826]
MADKIIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQEDSGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=667940 OG832_RS10340 WP_124718426.1 2269593..2270237(-) (vraR) [Streptomyces sp. NBC_00826]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGTCTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTGGTAGGCGAGGCGGCCGACGGCGCCGAGGGGGTGGCCAGGACCGAGGAGCTCCGCCCCGACG
TCGTCCTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCAGGCTGCGCGAACTGGAGAACCCGGCC
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGCGCCGGAGCCTCCGGTTACGTGTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCGATCCGCTCGGTGTACGCGGGCCACGTCCTGCTCCAGCCGGAGGTCG
CGGGGGCCCTGCTCGCCCAGGAGGACTCGGGCAGCGGAACGGGCCGGGGGAGCACCCTCACCGAACGGGAGCGGGAGGTG
CTCGGCCTGATCGCCGACGGCCGCTCCAACCGCGAGATCGCGCGAGCACTGGTCCTCTCCGAGAAGACCGTCAAGACACA
CGTCTCGAACATCCTGATGAAGCTGGACCTCTCGGACCGGACCCAGGCCGCCCTGTGGGCGGTACGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407

Multiple sequence alignment