Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | MPG20_RS00725 | Genome accession | NZ_CP094171 |
| Coordinates | 149661..149786 (+) | Length | 41 a.a. |
| NCBI ID | WP_001217874.1 | Uniprot ID | A0AAI7ZWZ6 |
| Organism | Helicobacter pylori strain Hpfe0003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144661..154786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG20_RS00700 (MPG20_00700) | - | 144727..146949 (+) | 2223 | WP_245074388.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG20_RS00705 (MPG20_00705) | panD | 146939..147292 (+) | 354 | WP_180670611.1 | aspartate 1-decarboxylase | - |
| MPG20_RS00710 (MPG20_00710) | - | 147295..147588 (+) | 294 | WP_048944407.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG20_RS00715 (MPG20_00715) | - | 147588..148583 (+) | 996 | WP_245074876.1 | PDZ domain-containing protein | - |
| MPG20_RS00720 (MPG20_00720) | comB6 | 148590..149645 (+) | 1056 | WP_180608952.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG20_RS00725 (MPG20_00725) | comB7 | 149661..149786 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG20_RS00730 (MPG20_00730) | comB8 | 149783..150526 (+) | 744 | WP_245050849.1 | virB8 family protein | Machinery gene |
| MPG20_RS00735 (MPG20_00735) | comB9 | 150526..151488 (+) | 963 | WP_245074390.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG20_RS00740 (MPG20_00740) | comB10 | 151481..152617 (+) | 1137 | WP_245074392.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG20_RS00745 (MPG20_00745) | - | 152683..154095 (+) | 1413 | WP_245074394.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 41 a.a. Molecular weight: 4798.82 Da Isoelectric Point: 9.3278
>NTDB_id=667941 MPG20_RS00725 WP_001217874.1 149661..149786(+) (comB7) [Helicobacter pylori strain Hpfe0003]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
Nucleotide
Download Length: 126 bp
>NTDB_id=667941 MPG20_RS00725 WP_001217874.1 149661..149786(+) (comB7) [Helicobacter pylori strain Hpfe0003]
ATGAGAATTTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
ATGAGAATTTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
87.805 |
100 |
0.878 |