Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG20_RS00730 Genome accession   NZ_CP094171
Coordinates   149783..150526 (+) Length   247 a.a.
NCBI ID   WP_245050849.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144783..155526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS00705 (MPG20_00705) panD 146939..147292 (+) 354 WP_180670611.1 aspartate 1-decarboxylase -
  MPG20_RS00710 (MPG20_00710) - 147295..147588 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  MPG20_RS00715 (MPG20_00715) - 147588..148583 (+) 996 WP_245074876.1 PDZ domain-containing protein -
  MPG20_RS00720 (MPG20_00720) comB6 148590..149645 (+) 1056 WP_180608952.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG20_RS00725 (MPG20_00725) comB7 149661..149786 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG20_RS00730 (MPG20_00730) comB8 149783..150526 (+) 744 WP_245050849.1 virB8 family protein Machinery gene
  MPG20_RS00735 (MPG20_00735) comB9 150526..151488 (+) 963 WP_245074390.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG20_RS00740 (MPG20_00740) comB10 151481..152617 (+) 1137 WP_245074392.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG20_RS00745 (MPG20_00745) - 152683..154095 (+) 1413 WP_245074394.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG20_RS00750 (MPG20_00750) gmd 154109..155254 (+) 1146 WP_245074396.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28726.99 Da        Isoelectric Point: 8.9546

>NTDB_id=667942 MPG20_RS00730 WP_245050849.1 149783..150526(+) (comB8) [Helicobacter pylori strain Hpfe0003]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667942 MPG20_RS00730 WP_245050849.1 149783..150526(+) (comB8) [Helicobacter pylori strain Hpfe0003]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAATCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGATAAGCATTATGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGTTGGTGTATGAAAAGCGTTATAAAATTGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GCGCCAACTAATAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment