Detailed information NTG0667922

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF82_RS00725
• Genome accession: NZ_CP094170
• Coordinates: 151387..152352 (+)
• Length: 321 a.a.
• NCBI ID: WP_245089938.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0004
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146387..157352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF82_RS00695 (MPF82_00695)	panD	147796..148146 (+)	351	WP_000142214.1	aspartate 1-decarboxylase	-
MPF82_RS00700 (MPF82_00700)	-	148157..148450 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF82_RS00705 (MPF82_00705)	-	148450..149445 (+)	996	WP_245090793.1	PDZ domain-containing protein	-
MPF82_RS00710 (MPF82_00710)	comB6	149451..150506 (+)	1056	WP_245090795.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF82_RS00715 (MPF82_00715)	comB7	150522..150647 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPF82_RS00720 (MPF82_00720)	comB8	150644..151387 (+)	744	WP_245089936.1	virB8 family protein	Machinery gene
MPF82_RS00725 (MPF82_00725)	comB9	151387..152352 (+)	966	WP_245089938.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF82_RS00730 (MPF82_00730)	comB10	152345..153481 (+)	1137	WP_245089940.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF82_RS00735 (MPF82_00735)	-	153551..154963 (+)	1413	WP_245089942.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF82_RS00740 (MPF82_00740)	gmd	154977..156122 (+)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
MPF82_RS00745 (MPF82_00745)	-	156115..157047 (+)	933	WP_245089944.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36885.49 Da
• Isoelectric Point: 9.5584

>NTDB_id=667922 MPF82_RS00725 WP_245089938.1 151387..152352(+) (comB9) [Helicobacter pylori strain Hpfe0004]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKGETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667922 MPF82_RS00725 WP_245089938.1 151387..152352(+) (comB9) [Helicobacter pylori strain Hpfe0004]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTAGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGATTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGGAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTATATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.941