Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPF82_RS00710 | Genome accession | NZ_CP094170 |
| Coordinates | 149451..150506 (+) | Length | 351 a.a. |
| NCBI ID | WP_245090795.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0004 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144451..155506
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF82_RS00680 (MPF82_00680) | - | 144879..145292 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPF82_RS00685 (MPF82_00685) | - | 145312..145587 (+) | 276 | WP_245089932.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPF82_RS00690 (MPF82_00690) | - | 145587..147806 (+) | 2220 | WP_245089934.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPF82_RS00695 (MPF82_00695) | panD | 147796..148146 (+) | 351 | WP_000142214.1 | aspartate 1-decarboxylase | - |
| MPF82_RS00700 (MPF82_00700) | - | 148157..148450 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF82_RS00705 (MPF82_00705) | - | 148450..149445 (+) | 996 | WP_245090793.1 | PDZ domain-containing protein | - |
| MPF82_RS00710 (MPF82_00710) | comB6 | 149451..150506 (+) | 1056 | WP_245090795.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF82_RS00715 (MPF82_00715) | comB7 | 150522..150647 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPF82_RS00720 (MPF82_00720) | comB8 | 150644..151387 (+) | 744 | WP_245089936.1 | virB8 family protein | Machinery gene |
| MPF82_RS00725 (MPF82_00725) | comB9 | 151387..152352 (+) | 966 | WP_245089938.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF82_RS00730 (MPF82_00730) | comB10 | 152345..153481 (+) | 1137 | WP_245089940.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF82_RS00735 (MPF82_00735) | - | 153551..154963 (+) | 1413 | WP_245089942.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39862.80 Da Isoelectric Point: 8.8165
>NTDB_id=667919 MPF82_RS00710 WP_245090795.1 149451..150506(+) (comB6) [Helicobacter pylori strain Hpfe0004]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667919 MPF82_RS00710 WP_245090795.1 149451..150506(+) (comB6) [Helicobacter pylori strain Hpfe0004]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAATCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAATCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.866 |
100 |
0.969 |