Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | MPF82_RS00715 | Genome accession | NZ_CP094170 |
| Coordinates | 150522..150647 (+) | Length | 41 a.a. |
| NCBI ID | WP_001217874.1 | Uniprot ID | A0AAI7ZWZ6 |
| Organism | Helicobacter pylori strain Hpfe0004 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145522..155647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF82_RS00690 (MPF82_00690) | - | 145587..147806 (+) | 2220 | WP_245089934.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPF82_RS00695 (MPF82_00695) | panD | 147796..148146 (+) | 351 | WP_000142214.1 | aspartate 1-decarboxylase | - |
| MPF82_RS00700 (MPF82_00700) | - | 148157..148450 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF82_RS00705 (MPF82_00705) | - | 148450..149445 (+) | 996 | WP_245090793.1 | PDZ domain-containing protein | - |
| MPF82_RS00710 (MPF82_00710) | comB6 | 149451..150506 (+) | 1056 | WP_245090795.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF82_RS00715 (MPF82_00715) | comB7 | 150522..150647 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPF82_RS00720 (MPF82_00720) | comB8 | 150644..151387 (+) | 744 | WP_245089936.1 | virB8 family protein | Machinery gene |
| MPF82_RS00725 (MPF82_00725) | comB9 | 151387..152352 (+) | 966 | WP_245089938.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF82_RS00730 (MPF82_00730) | comB10 | 152345..153481 (+) | 1137 | WP_245089940.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF82_RS00735 (MPF82_00735) | - | 153551..154963 (+) | 1413 | WP_245089942.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 41 a.a. Molecular weight: 4798.82 Da Isoelectric Point: 9.3278
>NTDB_id=667920 MPF82_RS00715 WP_001217874.1 150522..150647(+) (comB7) [Helicobacter pylori strain Hpfe0004]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
Nucleotide
Download Length: 126 bp
>NTDB_id=667920 MPF82_RS00715 WP_001217874.1 150522..150647(+) (comB7) [Helicobacter pylori strain Hpfe0004]
ATGAGAATCTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACGTTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
ATGAGAATCTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACGTTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
87.805 |
100 |
0.878 |