Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF82_RS00720 Genome accession   NZ_CP094170
Coordinates   150644..151387 (+) Length   247 a.a.
NCBI ID   WP_245089936.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145644..156387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF82_RS00695 (MPF82_00695) panD 147796..148146 (+) 351 WP_000142214.1 aspartate 1-decarboxylase -
  MPF82_RS00700 (MPF82_00700) - 148157..148450 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  MPF82_RS00705 (MPF82_00705) - 148450..149445 (+) 996 WP_245090793.1 PDZ domain-containing protein -
  MPF82_RS00710 (MPF82_00710) comB6 149451..150506 (+) 1056 WP_245090795.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF82_RS00715 (MPF82_00715) comB7 150522..150647 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF82_RS00720 (MPF82_00720) comB8 150644..151387 (+) 744 WP_245089936.1 virB8 family protein Machinery gene
  MPF82_RS00725 (MPF82_00725) comB9 151387..152352 (+) 966 WP_245089938.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF82_RS00730 (MPF82_00730) comB10 152345..153481 (+) 1137 WP_245089940.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF82_RS00735 (MPF82_00735) - 153551..154963 (+) 1413 WP_245089942.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF82_RS00740 (MPF82_00740) gmd 154977..156122 (+) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28711.98 Da        Isoelectric Point: 9.2603

>NTDB_id=667921 MPF82_RS00720 WP_245089936.1 150644..151387(+) (comB8) [Helicobacter pylori strain Hpfe0004]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFENLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667921 MPF82_RS00720 WP_245089936.1 150644..151387(+) (comB8) [Helicobacter pylori strain Hpfe0004]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGAATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment