Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG70_RS00700 | Genome accession | NZ_CP094168 |
| Coordinates | 148377..149513 (+) | Length | 378 a.a. |
| NCBI ID | WP_245062264.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0006 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143377..154513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG70_RS00665 (MPG70_00665) | panD | 143825..144175 (+) | 351 | WP_000142208.1 | aspartate 1-decarboxylase | - |
| MPG70_RS00670 (MPG70_00670) | - | 144186..144479 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG70_RS00675 (MPG70_00675) | - | 144479..145474 (+) | 996 | WP_245062852.1 | PDZ domain-containing protein | - |
| MPG70_RS00680 (MPG70_00680) | comB6 | 145480..146535 (+) | 1056 | WP_245062258.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG70_RS00685 (MPG70_00685) | comB7 | 146551..146676 (+) | 126 | WP_180655811.1 | comB7 lipoprotein | Machinery gene |
| MPG70_RS00690 (MPG70_00690) | comB8 | 146673..147416 (+) | 744 | WP_245062260.1 | virB8 family protein | Machinery gene |
| MPG70_RS00695 (MPG70_00695) | comB9 | 147416..148384 (+) | 969 | WP_245062262.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG70_RS00700 (MPG70_00700) | comB10 | 148377..149513 (+) | 1137 | WP_245062264.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG70_RS00705 (MPG70_00705) | - | 149582..150994 (+) | 1413 | WP_245062266.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG70_RS00710 (MPG70_00710) | gmd | 151008..152153 (+) | 1146 | WP_180419622.1 | GDP-mannose 4,6-dehydratase | - |
| MPG70_RS00715 (MPG70_00715) | - | 152146..153078 (+) | 933 | WP_245062267.1 | GDP-L-fucose synthase | - |
| MPG70_RS00720 (MPG70_00720) | hypE | 153345..154343 (-) | 999 | WP_245062270.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42169.84 Da Isoelectric Point: 9.9143
>NTDB_id=667902 MPG70_RS00700 WP_245062264.1 148377..149513(+) (comB10) [Helicobacter pylori strain Hpfe0006]
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKT
ALKALNSKEMNSSKEETFKSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKT
ALKALNSKEMNSSKEETFKSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667902 MPG70_RS00700 WP_245062264.1 148377..149513(+) (comB10) [Helicobacter pylori strain Hpfe0006]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCATTAAATAACCAACCCAACCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAACC
GCTTTAAAAGCTCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCATTAAATAACCAACCCAACCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAACC
GCTTTAAAAGCTCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |