Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG569_RS26695 Genome accession   NZ_CP108872
Coordinates   5950466..5952199 (-) Length   577 a.a.
NCBI ID   WP_266464318.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00827     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5945466..5957199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG569_RS26685 (OG569_26680) - 5946972..5948288 (+) 1317 WP_405932383.1 RNA polymerase sigma factor -
  OG569_RS26690 (OG569_26685) rcrQ 5948538..5950466 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG569_RS26695 (OG569_26690) rcrP 5950466..5952199 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG569_RS26700 (OG569_26695) - 5952350..5953804 (-) 1455 WP_405908684.1 FGGY family carbohydrate kinase -
  OG569_RS26705 (OG569_26700) - 5953891..5954196 (-) 306 WP_405908685.1 YtxH domain-containing protein -
  OG569_RS26725 (OG569_26720) - 5954948..5955223 (+) 276 WP_405908800.1 hypothetical protein -
  OG569_RS26730 (OG569_26725) - 5955228..5955632 (-) 405 WP_405908801.1 NUDIX hydrolase -
  OG569_RS26735 (OG569_26730) - 5955715..5955945 (-) 231 WP_405908802.1 hypothetical protein -
  OG569_RS26740 (OG569_26735) - 5956279..5956479 (-) 201 WP_329546784.1 hypothetical protein -
  OG569_RS26745 (OG569_26740) - 5956722..5956982 (+) 261 WP_266459079.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62520.75 Da        Isoelectric Point: 6.5101

>NTDB_id=667900 OG569_RS26695 WP_266464318.1 5950466..5952199(-) (rcrP) [Streptomyces sp. NBC_00827]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIAISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLGVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRKANADLTEVSLGTGRYLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVVELRRHGHLEIRGGGFRYPGAEEPVLTAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYKTDAMLRAALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667900 OG569_RS26695 WP_266464318.1 5950466..5952199(-) (rcrP) [Streptomyces sp. NBC_00827]
GTGCTCATACGACTACTTCGTACGTACCTCCGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACTCTCAACGCGCACATCATTGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCCTTCGGCGCAGTCATGATCGCGATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCGGCGGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTACTCGGCCTCGGTGTGACCCTGATCATCCGGCGGCTGCGGCCGCTGTTCCGCTCCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCGTACGGGACG
ACTACGAGAAGGAGCGTTTCCGGAAGGCGAACGCCGATCTGACCGAGGTGTCGCTGGGTACCGGGCGGTACCTGGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTGTCCTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGTATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCGACAGCAGTGTGGTGCCG
CCGACCGCACCCGTCGTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGGGGCGGCGGGTTCCGTTATCCGGGTGCCGA
GGAGCCGGTGCTGACGGCCGTCGACCTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCCACGGGCAGTGGCA
AGTCGACGCTTCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAGACTGCTTGCCAAGACGGTCGGACTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCGAC
GAACCTGCGGTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGGGCCTGGAGAACGGGCTCGACTCCCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGACTC
GCGATCGCCCGCACCCTCGTACAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACAAGACCGA
CGCCATGCTGCGCGCGGCGCTCGCCGCGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGGCACCACGAACTGATGGCGGGCAAT
GAGACATACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404

Multiple sequence alignment