Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG70_RS00690 Genome accession   NZ_CP094168
Coordinates   146673..147416 (+) Length   247 a.a.
NCBI ID   WP_245062260.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141673..152416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG70_RS00665 (MPG70_00665) panD 143825..144175 (+) 351 WP_000142208.1 aspartate 1-decarboxylase -
  MPG70_RS00670 (MPG70_00670) - 144186..144479 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG70_RS00675 (MPG70_00675) - 144479..145474 (+) 996 WP_245062852.1 PDZ domain-containing protein -
  MPG70_RS00680 (MPG70_00680) comB6 145480..146535 (+) 1056 WP_245062258.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG70_RS00685 (MPG70_00685) comB7 146551..146676 (+) 126 WP_180655811.1 comB7 lipoprotein Machinery gene
  MPG70_RS00690 (MPG70_00690) comB8 146673..147416 (+) 744 WP_245062260.1 virB8 family protein Machinery gene
  MPG70_RS00695 (MPG70_00695) comB9 147416..148384 (+) 969 WP_245062262.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG70_RS00700 (MPG70_00700) comB10 148377..149513 (+) 1137 WP_245062264.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG70_RS00705 (MPG70_00705) - 149582..150994 (+) 1413 WP_245062266.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG70_RS00710 (MPG70_00710) gmd 151008..152153 (+) 1146 WP_180419622.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28742.99 Da        Isoelectric Point: 8.9546

>NTDB_id=667900 MPG70_RS00690 WP_245062260.1 146673..147416(+) (comB8) [Helicobacter pylori strain Hpfe0006]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
TQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667900 MPG70_RS00690 WP_245062260.1 146673..147416(+) (comB8) [Helicobacter pylori strain Hpfe0006]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
ACGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGTGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment