Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG569_RS26690 Genome accession   NZ_CP108872
Coordinates   5948538..5950466 (-) Length   642 a.a.
NCBI ID   WP_371549460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00827     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5943538..5955466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG569_RS26680 (OG569_26675) dnaG 5944826..5946736 (+) 1911 WP_405932382.1 DNA primase -
  OG569_RS26685 (OG569_26680) - 5946972..5948288 (+) 1317 WP_405932383.1 RNA polymerase sigma factor -
  OG569_RS26690 (OG569_26685) rcrQ 5948538..5950466 (-) 1929 WP_371549460.1 ABC transporter ATP-binding protein Regulator
  OG569_RS26695 (OG569_26690) rcrP 5950466..5952199 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG569_RS26700 (OG569_26695) - 5952350..5953804 (-) 1455 WP_405908684.1 FGGY family carbohydrate kinase -
  OG569_RS26705 (OG569_26700) - 5953891..5954196 (-) 306 WP_405908685.1 YtxH domain-containing protein -
  OG569_RS26725 (OG569_26720) - 5954948..5955223 (+) 276 WP_405908800.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69349.65 Da        Isoelectric Point: 5.3011

>NTDB_id=667899 OG569_RS26690 WP_371549460.1 5948538..5950466(-) (rcrQ) [Streptomyces sp. NBC_00827]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLSQFKPERGTMYAMLSLGVVSVALSVLGPKILGRATDLVFAGIIGREMPAGQ
TKAEALEAMRARGDGGTADMLSGTDFTPGKGIDFGAVGNVLLLALCAFVVAGVLMAVSTRLSNRAINMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALITVPLSFFIATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQDESAAQFAEQNEQLYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPALRPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEASRAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADAILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=667899 OG569_RS26690 WP_371549460.1 5948538..5950466(-) (rcrQ) [Streptomyces sp. NBC_00827]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCGGCACGATGTACGCGATGCTCTCCCTCGGTGTGGTCAGCGTGGCGCTGTCCG
TGCTGGGCCCGAAGATCCTGGGCAGGGCGACCGACCTGGTCTTCGCCGGGATCATCGGACGGGAGATGCCCGCCGGCCAG
ACGAAGGCCGAGGCCCTCGAGGCGATGCGGGCACGCGGCGACGGCGGCACGGCCGACATGCTCTCGGGTACGGACTTCAC
TCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTGCGTTCGTGGTGGCCGGCGTGC
TGATGGCGGTGTCCACCCGGCTCTCGAACCGGGCGATCAACATGACCGTCTACCGGATGCGCGAGGACCTGCAGGCCAAG
CTGTCCCGCCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCCCTCCTCACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCGCCGCTCCTCGCCCTGGTGGCACTGATCACCGTGCCGCTGTCCTTCTTCATCGCCACACGGGTCGGCAAG
CGTTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGATGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGCAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGGTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTCGTGCAGTCGGGCGTGGCGTCCGCCGAGCGGATCTTCGAGC
TGCTCGACGCGGACGAGCAGGAGGCCGATCCGGTTCCGGCGCTCCGTCCCGACGAGCTGCGGGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTCCTCATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACTCTCGACGGGGTCGACATCGCCGCCATGTCCCGGGACGAACTCCGGGACGGCATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGGGGCGAGATCGAGGAAGC
CTCGCGGGCCGCCCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGGACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAG
GCGACGTCGTCCGTCGACACCCGGACGGAGGTCCTGATCCAGAAGGCTATGGCGAAGCTTGCGCACGGGCGTACGTCGTT
CGTGATCGCGCATCGGCTGTCGACGATCCGGGATGCGGACGCGATCCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGCGCACGCGGAACTGCTCGCCGCGGACGGGGCGTACGCGCGCCTGTACAAGGCCCAGTTCGCACAGGCGGTGGCTGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(44-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.097

96.573

0.407

Multiple sequence alignment