Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG04_RS00730 | Genome accession | NZ_CP094161 |
| Coordinates | 151156..152292 (+) | Length | 378 a.a. |
| NCBI ID | WP_245044533.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0015 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 146156..157292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG04_RS00695 (MPG04_00695) | panD | 146610..146960 (+) | 351 | WP_245044529.1 | aspartate 1-decarboxylase | - |
| MPG04_RS00700 (MPG04_00700) | - | 146971..147264 (+) | 294 | WP_131128566.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG04_RS00705 (MPG04_00705) | - | 147264..148259 (+) | 996 | WP_245044999.1 | PDZ domain-containing protein | - |
| MPG04_RS00710 (MPG04_00710) | comB6 | 148265..149320 (+) | 1056 | WP_245044530.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG04_RS00715 (MPG04_00715) | comB7 | 149336..149461 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG04_RS00720 (MPG04_00720) | comB8 | 149458..150201 (+) | 744 | WP_000660524.1 | virB8 family protein | Machinery gene |
| MPG04_RS00725 (MPG04_00725) | comB9 | 150201..151163 (+) | 963 | WP_245044532.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG04_RS00730 (MPG04_00730) | comB10 | 151156..152292 (+) | 1137 | WP_245044533.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG04_RS00735 (MPG04_00735) | - | 152363..153778 (+) | 1416 | WP_245044534.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG04_RS00740 (MPG04_00740) | gmd | 153789..154934 (+) | 1146 | WP_245044535.1 | GDP-mannose 4,6-dehydratase | - |
| MPG04_RS00745 (MPG04_00745) | - | 154927..155859 (+) | 933 | WP_220956506.1 | GDP-L-fucose synthase | - |
| MPG04_RS00750 (MPG04_00750) | hypE | 156156..157154 (-) | 999 | WP_245044536.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42151.78 Da Isoelectric Point: 9.9398
>NTDB_id=667814 MPG04_RS00730 WP_245044533.1 151156..152292(+) (comB10) [Helicobacter pylori strain Hpfe0015]
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTSIESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTSIESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667814 MPG04_RS00730 WP_245044533.1 151156..152292(+) (comB10) [Helicobacter pylori strain Hpfe0015]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAGCATAGAAAGCTCCAAAGACGCTACCATCAAGGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGTAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTA
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCTAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAGTTATTG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAGCATAGAAAGCTCCAAAGACGCTACCATCAAGGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGTAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTA
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCTAATACTGACATATTCTTTCCTATACCCAGAGAGAATGAAGTTATTG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |