Detailed information NTG0667813

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG04_RS00725
• Genome accession: NZ_CP094161
• Coordinates: 150201..151163 (+)
• Length: 320 a.a.
• NCBI ID: WP_245044532.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0015
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145201..156163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG04_RS00695 (MPG04_00695)	panD	146610..146960 (+)	351	WP_245044529.1	aspartate 1-decarboxylase	-
MPG04_RS00700 (MPG04_00700)	-	146971..147264 (+)	294	WP_131128566.1	YbaB/EbfC family nucleoid-associated protein	-
MPG04_RS00705 (MPG04_00705)	-	147264..148259 (+)	996	WP_245044999.1	PDZ domain-containing protein	-
MPG04_RS00710 (MPG04_00710)	comB6	148265..149320 (+)	1056	WP_245044530.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG04_RS00715 (MPG04_00715)	comB7	149336..149461 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG04_RS00720 (MPG04_00720)	comB8	149458..150201 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG04_RS00725 (MPG04_00725)	comB9	150201..151163 (+)	963	WP_245044532.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG04_RS00730 (MPG04_00730)	comB10	151156..152292 (+)	1137	WP_245044533.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG04_RS00735 (MPG04_00735)	-	152363..153778 (+)	1416	WP_245044534.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG04_RS00740 (MPG04_00740)	gmd	153789..154934 (+)	1146	WP_245044535.1	GDP-mannose 4,6-dehydratase	-
MPG04_RS00745 (MPG04_00745)	-	154927..155859 (+)	933	WP_220956506.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36877.57 Da
• Isoelectric Point: 9.4841

>NTDB_id=667813 MPG04_RS00725 WP_245044532.1 150201..151163(+) (comB9) [Helicobacter pylori strain Hpfe0015]
MRKVLCTLVGFLLVFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQKKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667813 MPG04_RS00725 WP_245044532.1 150201..151163(+) (comB9) [Helicobacter pylori strain Hpfe0015]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAAGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAAAAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.411	100	0.931