Detailed information NTG0667793

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG03_RS01155
• Genome accession: NZ_CP094160
• Coordinates: 243808..244770 (+)
• Length: 320 a.a.
• NCBI ID: WP_245021350.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0016
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 238808..249770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG03_RS01125 (MPG03_01125)	panD	240217..240567 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG03_RS01130 (MPG03_01130)	-	240578..240871 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG03_RS01135 (MPG03_01135)	-	240871..241866 (+)	996	WP_245021349.1	PDZ domain-containing protein	-
MPG03_RS01140 (MPG03_01140)	comB6	241872..242927 (+)	1056	WP_245021645.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG03_RS01145 (MPG03_01145)	comB7	242943..243068 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG03_RS01150 (MPG03_01150)	comB8	243065..243808 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG03_RS01155 (MPG03_01155)	comB9	243808..244770 (+)	963	WP_245021350.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG03_RS01160 (MPG03_01160)	comB10	244763..245899 (+)	1137	WP_245021351.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG03_RS01165 (MPG03_01165)	-	245969..247381 (+)	1413	WP_245021352.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG03_RS01170 (MPG03_01170)	gmd	247395..248540 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG03_RS01175 (MPG03_01175)	-	248533..249465 (+)	933	WP_180472934.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36815.42 Da
• Isoelectric Point: 9.3756

>NTDB_id=667793 MPG03_RS01155 WP_245021350.1 243808..244770(+) (comB9) [Helicobacter pylori strain Hpfe0016]
MRKVLCTLVGFLLAFSTLKADDFLEEANETAPVNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667793 MPG03_RS01155 WP_245021350.1 243808..244770(+) (comB9) [Helicobacter pylori strain Hpfe0016]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGTGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACTCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATCTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAATCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.411	100	0.931