Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG293_RS15040 Genome accession   NZ_CP108867
Coordinates   3499381..3500805 (+) Length   474 a.a.
NCBI ID   WP_405999296.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00829     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3494381..3505805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG293_RS15025 (OG293_15035) - 3495183..3496115 (-) 933 WP_405999293.1 Ppx/GppA family phosphatase -
  OG293_RS15030 (OG293_15040) - 3496155..3497003 (+) 849 WP_405999294.1 hypothetical protein -
  OG293_RS15035 (OG293_15045) - 3497146..3498876 (-) 1731 WP_405999295.1 BACON domain-containing protein -
  OG293_RS15040 (OG293_15050) radA/sms 3499381..3500805 (+) 1425 WP_405999296.1 DNA repair protein RadA Machinery gene
  OG293_RS15045 (OG293_15055) disA 3500880..3502001 (+) 1122 WP_405999297.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG293_RS15050 (OG293_15060) - 3502059..3502850 (-) 792 WP_405999298.1 hypothetical protein -
  OG293_RS15055 (OG293_15065) - 3503370..3504278 (+) 909 WP_405999299.1 A/G-specific adenine glycosylase -
  OG293_RS15060 (OG293_15070) - 3504463..3505035 (+) 573 WP_405999300.1 SigE family RNA polymerase sigma factor -
  OG293_RS15065 (OG293_15075) - 3505023..3505697 (+) 675 WP_405999301.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49640.65 Da        Isoelectric Point: 8.2598

>NTDB_id=667790 OG293_RS15040 WP_405999296.1 3499381..3500805(+) (radA/sms) [Streptomyces sp. NBC_00829]
MAARTKSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKTPAGMKVTEVADMGDALRVLPRGRSRASDRGSEGAAAKERT

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=667790 OG293_RS15040 WP_405999296.1 3499381..3500805(+) (radA/sms) [Streptomyces sp. NBC_00829]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACCGCCGCCGGCC
GCGTCTCCACCGCGGCGCTGCCGATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCTCCACCGGGGTGGCGGAGCTC
GACCGTGTGCTCGGCGGCGGCCTCGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTAGGCAAGTCCACCCT
GCTCCTGGACGTCGCCGCGAAGGCCGCGAGCGACGACCACCGCACGCTCTATGTGACGGGCGAGGAGTCCGCGAGCCAGG
TCCGCCTGCGCGCCGACCGGATCAATGCCCTGCACGACCACCTCTATCTCGCCGCCGAGACCGATCTCTCCGCGGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGAGC
TCCCGGCGGCATGGCGCAGGTGCGCGAGGTCGCAGGCGCGCTCATCCGCGCCTCCAAGGAGCGGGGCATGTCCACACTCC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCATGCCCGCCTCCGGCTTGTACGCGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTCCACGACGAGGGCATCACCGGCCTGGCGGACCCCTCGGGCCTCTTCCTCACCCGGCGGGCCGAGGCCGTCCCGG
GCACCTGCCTGACGGTCACCCTCGAAGGCCGCCGCCCCCTCGTCGCCGAAGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCTCCACGGCGCACGACCTCGGGCCTGGAGACGTCCAGGGTCTCGATGATGCTCGCCGTGCTGGAACAGCGCGGCCG
GATCACCGCCCTGGGCAAACGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCGCTCGCCCTGGCCTCGGCCGCAAGCGACACCCCACTGCCCAAGAATCTGGTCGCGATCGGAGAAGTGGGCCTC
GCAGGCGAGGTCAGAAGGGTGACGGGTGTCCAGCGCAGGCTCGCCGAGGCACACCGGCTCGGCTTCACACACGCCCTCGT
CCCCTCCGATCCCGGCAAGACTCCGGCGGGCATGAAGGTCACGGAAGTGGCCGACATGGGGGACGCACTCCGGGTCCTTC
CGCGCGGCCGTTCGAGAGCCTCGGACAGGGGTTCGGAGGGGGCTGCGGCGAAAGAGCGTACCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.57

0.42
  radA Streptococcus pneumoniae Rx1

43.142

95.359

0.411
  radA Streptococcus pneumoniae R6

43.142

95.359

0.411
  radA Streptococcus pneumoniae TIGR4

43.142

95.359

0.411
  radA Streptococcus pneumoniae D39

43.142

95.359

0.411
  radA Streptococcus mitis NCTC 12261

44.138

91.772

0.405
  radA Streptococcus mitis SK321

44.138

91.772

0.405

Multiple sequence alignment