Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG03_RS01150 Genome accession   NZ_CP094160
Coordinates   243065..243808 (+) Length   247 a.a.
NCBI ID   WP_000660533.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0016     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 238065..248808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG03_RS01125 (MPG03_01125) panD 240217..240567 (+) 351 WP_000142212.1 aspartate 1-decarboxylase -
  MPG03_RS01130 (MPG03_01130) - 240578..240871 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  MPG03_RS01135 (MPG03_01135) - 240871..241866 (+) 996 WP_245021349.1 PDZ domain-containing protein -
  MPG03_RS01140 (MPG03_01140) comB6 241872..242927 (+) 1056 WP_245021645.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG03_RS01145 (MPG03_01145) comB7 242943..243068 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG03_RS01150 (MPG03_01150) comB8 243065..243808 (+) 744 WP_000660533.1 virB8 family protein Machinery gene
  MPG03_RS01155 (MPG03_01155) comB9 243808..244770 (+) 963 WP_245021350.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG03_RS01160 (MPG03_01160) comB10 244763..245899 (+) 1137 WP_245021351.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG03_RS01165 (MPG03_01165) - 245969..247381 (+) 1413 WP_245021352.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG03_RS01170 (MPG03_01170) gmd 247395..248540 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28670.89 Da        Isoelectric Point: 8.9546

>NTDB_id=667792 MPG03_RS01150 WP_000660533.1 243065..243808(+) (comB8) [Helicobacter pylori strain Hpfe0016]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667792 MPG03_RS01150 WP_000660533.1 243065..243808(+) (comB8) [Helicobacter pylori strain Hpfe0016]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAATAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCAATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment