Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG81_RS00735 | Genome accession | NZ_CP094151 |
| Coordinates | 157960..159096 (+) | Length | 378 a.a. |
| NCBI ID | WP_245087274.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe019 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152960..164096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG81_RS00700 (MPG81_00700) | panD | 153414..153764 (+) | 351 | WP_245087265.1 | aspartate 1-decarboxylase | - |
| MPG81_RS00705 (MPG81_00705) | - | 153775..154068 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG81_RS00710 (MPG81_00710) | - | 154068..155063 (+) | 996 | WP_245088312.1 | PDZ domain-containing protein | - |
| MPG81_RS00715 (MPG81_00715) | comB6 | 155069..156124 (+) | 1056 | WP_180589278.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG81_RS00720 (MPG81_00720) | comB7 | 156140..156265 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG81_RS00725 (MPG81_00725) | comB8 | 156262..157005 (+) | 744 | WP_245087269.1 | virB8 family protein | Machinery gene |
| MPG81_RS00730 (MPG81_00730) | comB9 | 157005..157967 (+) | 963 | WP_245087272.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG81_RS00735 (MPG81_00735) | comB10 | 157960..159096 (+) | 1137 | WP_245087274.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG81_RS00740 (MPG81_00740) | - | 159166..160578 (+) | 1413 | WP_245087277.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG81_RS00745 (MPG81_00745) | gmd | 160592..161737 (+) | 1146 | WP_245087280.1 | GDP-mannose 4,6-dehydratase | - |
| MPG81_RS00750 (MPG81_00750) | - | 161730..162662 (+) | 933 | WP_245087283.1 | GDP-L-fucose synthase | - |
| MPG81_RS00755 (MPG81_00755) | hypE | 162923..163921 (-) | 999 | WP_245087286.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42092.76 Da Isoelectric Point: 10.0572
>NTDB_id=667683 MPG81_RS00735 WP_245087274.1 157960..159096(+) (comB10) [Helicobacter pylori strain Hpfe019]
MNKWIKGALVLVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTKSSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIIWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK
MNKWIKGALVLVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTKSSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIIWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667683 MPG81_RS00735 WP_245087274.1 157960..159096(+) (comB10) [Helicobacter pylori strain Hpfe019]
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTGGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAAAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCTTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTATATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTCTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTGGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAAAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCTTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTATATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTCTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |