Detailed information NTG0667682

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG81_RS00730
• Genome accession: NZ_CP094151
• Coordinates: 157005..157967 (+)
• Length: 320 a.a.
• NCBI ID: WP_245087272.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe019
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 152005..162967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG81_RS00700 (MPG81_00700)	panD	153414..153764 (+)	351	WP_245087265.1	aspartate 1-decarboxylase	-
MPG81_RS00705 (MPG81_00705)	-	153775..154068 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG81_RS00710 (MPG81_00710)	-	154068..155063 (+)	996	WP_245088312.1	PDZ domain-containing protein	-
MPG81_RS00715 (MPG81_00715)	comB6	155069..156124 (+)	1056	WP_180589278.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG81_RS00720 (MPG81_00720)	comB7	156140..156265 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG81_RS00725 (MPG81_00725)	comB8	156262..157005 (+)	744	WP_245087269.1	virB8 family protein	Machinery gene
MPG81_RS00730 (MPG81_00730)	comB9	157005..157967 (+)	963	WP_245087272.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG81_RS00735 (MPG81_00735)	comB10	157960..159096 (+)	1137	WP_245087274.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG81_RS00740 (MPG81_00740)	-	159166..160578 (+)	1413	WP_245087277.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG81_RS00745 (MPG81_00745)	gmd	160592..161737 (+)	1146	WP_245087280.1	GDP-mannose 4,6-dehydratase	-
MPG81_RS00750 (MPG81_00750)	-	161730..162662 (+)	933	WP_245087283.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36815.36 Da
• Isoelectric Point: 9.3455

>NTDB_id=667682 MPG81_RS00730 WP_245087272.1 157005..157967(+) (comB9) [Helicobacter pylori strain Hpfe019]
MRKVLYALVGFLLAFSALKADDFLEEANETAPVNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667682 MPG81_RS00730 WP_245087272.1 157005..157967(+) (comB9) [Helicobacter pylori strain Hpfe019]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGTGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAGTTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.947