Detailed information NTG0667592

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG27_RS00800
• Genome accession: NZ_CP094147
• Coordinates: 169426..170388 (+)
• Length: 320 a.a.
• NCBI ID: WP_245042656.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe027
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 164426..175388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG27_RS00770 (MPG27_00770)	panD	165835..166185 (+)	351	WP_073470207.1	aspartate 1-decarboxylase	-
MPG27_RS00775 (MPG27_00775)	-	166196..166489 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG27_RS00780 (MPG27_00780)	-	166489..167484 (+)	996	WP_245043310.1	PDZ domain-containing protein	-
MPG27_RS00785 (MPG27_00785)	comB6	167490..168545 (+)	1056	WP_245042652.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG27_RS00790 (MPG27_00790)	comB7	168561..168686 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG27_RS00795 (MPG27_00795)	comB8	168683..169426 (+)	744	WP_245042654.1	virB8 family protein	Machinery gene
MPG27_RS00800 (MPG27_00800)	comB9	169426..170388 (+)	963	WP_245042656.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG27_RS00805 (MPG27_00805)	comB10	170381..171517 (+)	1137	WP_245042658.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG27_RS00810 (MPG27_00810)	-	171587..172999 (+)	1413	WP_245042667.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG27_RS00815 (MPG27_00815)	gmd	173014..174159 (+)	1146	WP_245042669.1	GDP-mannose 4,6-dehydratase	-
MPG27_RS00820 (MPG27_00820)	-	174152..175084 (+)	933	WP_245042671.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36877.49 Da
• Isoelectric Point: 9.3801

>NTDB_id=667592 MPG27_RS00800 WP_245042656.1 169426..170388(+) (comB9) [Helicobacter pylori strain Hpfe027]
MRKVLCTLVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKVRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667592 MPG27_RS00800 WP_245042656.1 169426..170388(+) (comB9) [Helicobacter pylori strain Hpfe027]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAGTCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.411	100	0.931