Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG27_RS00785 | Genome accession | NZ_CP094147 |
| Coordinates | 167490..168545 (+) | Length | 351 a.a. |
| NCBI ID | WP_245042652.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe027 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 162490..173545
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG27_RS00755 (MPG27_00755) | - | 162918..163331 (+) | 414 | WP_029650105.1 | universal stress protein | - |
| MPG27_RS00760 (MPG27_00760) | - | 163351..163626 (+) | 276 | WP_000784960.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG27_RS00765 (MPG27_00765) | - | 163626..165845 (+) | 2220 | WP_245042649.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG27_RS00770 (MPG27_00770) | panD | 165835..166185 (+) | 351 | WP_073470207.1 | aspartate 1-decarboxylase | - |
| MPG27_RS00775 (MPG27_00775) | - | 166196..166489 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG27_RS00780 (MPG27_00780) | - | 166489..167484 (+) | 996 | WP_245043310.1 | PDZ domain-containing protein | - |
| MPG27_RS00785 (MPG27_00785) | comB6 | 167490..168545 (+) | 1056 | WP_245042652.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG27_RS00790 (MPG27_00790) | comB7 | 168561..168686 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG27_RS00795 (MPG27_00795) | comB8 | 168683..169426 (+) | 744 | WP_245042654.1 | virB8 family protein | Machinery gene |
| MPG27_RS00800 (MPG27_00800) | comB9 | 169426..170388 (+) | 963 | WP_245042656.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG27_RS00805 (MPG27_00805) | comB10 | 170381..171517 (+) | 1137 | WP_245042658.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG27_RS00810 (MPG27_00810) | - | 171587..172999 (+) | 1413 | WP_245042667.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39907.94 Da Isoelectric Point: 8.8165
>NTDB_id=667589 MPG27_RS00785 WP_245042652.1 167490..168545(+) (comB6) [Helicobacter pylori strain Hpfe027]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667589 MPG27_RS00785 WP_245042652.1 167490..168545(+) (comB6) [Helicobacter pylori strain Hpfe027]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
95.726 |
100 |
0.957 |