Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG27_RS00795 Genome accession   NZ_CP094147
Coordinates   168683..169426 (+) Length   247 a.a.
NCBI ID   WP_245042654.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe027     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163683..174426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG27_RS00770 (MPG27_00770) panD 165835..166185 (+) 351 WP_073470207.1 aspartate 1-decarboxylase -
  MPG27_RS00775 (MPG27_00775) - 166196..166489 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG27_RS00780 (MPG27_00780) - 166489..167484 (+) 996 WP_245043310.1 PDZ domain-containing protein -
  MPG27_RS00785 (MPG27_00785) comB6 167490..168545 (+) 1056 WP_245042652.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG27_RS00790 (MPG27_00790) comB7 168561..168686 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG27_RS00795 (MPG27_00795) comB8 168683..169426 (+) 744 WP_245042654.1 virB8 family protein Machinery gene
  MPG27_RS00800 (MPG27_00800) comB9 169426..170388 (+) 963 WP_245042656.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG27_RS00805 (MPG27_00805) comB10 170381..171517 (+) 1137 WP_245042658.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG27_RS00810 (MPG27_00810) - 171587..172999 (+) 1413 WP_245042667.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG27_RS00815 (MPG27_00815) gmd 173014..174159 (+) 1146 WP_245042669.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28658.91 Da        Isoelectric Point: 8.9546

>NTDB_id=667591 MPG27_RS00795 WP_245042654.1 168683..169426(+) (comB8) [Helicobacter pylori strain Hpfe027]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNESKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667591 MPG27_RS00795 WP_245042654.1 168683..169426(+) (comB8) [Helicobacter pylori strain Hpfe027]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAACAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAGCAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment