Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA79_RS00735 Genome accession   NZ_CP108853
Coordinates   144977..145963 (+) Length   328 a.a.
NCBI ID   WP_326791270.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00841     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 139977..150963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA79_RS00715 (OHA79_00710) - 140164..142380 (-) 2217 WP_326791268.1 FUSC family protein -
  OHA79_RS00720 (OHA79_00715) - 142586..143053 (-) 468 WP_326791269.1 zinc ribbon domain-containing protein -
  OHA79_RS00725 (OHA79_00720) - 143148..143552 (-) 405 Protein_144 transposase -
  OHA79_RS00730 (OHA79_00725) - 143538..143924 (-) 387 Protein_145 transposase -
  OHA79_RS00735 (OHA79_00730) cytR 144977..145963 (+) 987 WP_326791270.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA79_RS00740 (OHA79_00735) - 146017..147228 (+) 1212 WP_326791271.1 extracellular solute-binding protein -
  OHA79_RS00745 (OHA79_00740) - 147228..148409 (+) 1182 WP_326791272.1 ABC transporter ATP-binding protein -
  OHA79_RS00750 (OHA79_00745) - 148406..149341 (+) 936 WP_326791273.1 ABC transporter permease -
  OHA79_RS00755 (OHA79_00750) - 149341..150225 (+) 885 WP_326791274.1 ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34924.30 Da        Isoelectric Point: 8.5088

>NTDB_id=667590 OHA79_RS00735 WP_326791270.1 144977..145963(+) (cytR) [Streptomyces sp. NBC_00841]
MAVTIRDVAKAAGVSASTVSRALSQPDIVDPCTRERVLKAADQLGYRPNRAARGLITGRTGNLGLIVPDLANPFFPMVIK
GIQAQARDADYAVFLADSDEKPAIEIGLVRALAVQVDGIILCSPRMSDAELREAAGYAPVVLANRRSGLLPASLVDNAGG
LREAVDHLVALGHRRIGFVAGPRSSWSSGERLRALRAAVDAVRVELVEIGNFAPQFEGGVAATDAILASDVTAVITYNDL
MALGLIQTLASRGIEVPRRLSVIGIDDIPTSAMVHPSLTTLRIPKEQVGRVSVDLMVQLLGDPQAHSRPQRELPTRLIVR
NTTTVPLH

Nucleotide


Download         Length: 987 bp        

>NTDB_id=667590 OHA79_RS00735 WP_326791270.1 144977..145963(+) (cytR) [Streptomyces sp. NBC_00841]
ATGGCGGTAACTATCCGTGACGTCGCGAAGGCCGCCGGCGTCTCAGCTTCCACGGTGTCACGAGCACTGTCGCAGCCCGA
CATCGTCGACCCCTGCACCCGCGAGCGGGTACTCAAGGCCGCCGACCAACTGGGCTACCGGCCCAACCGGGCGGCACGCG
GACTGATCACCGGACGCACCGGCAACCTGGGACTGATCGTCCCCGACCTGGCCAACCCCTTCTTCCCCATGGTCATCAAG
GGGATCCAGGCACAGGCCAGGGATGCCGACTACGCAGTCTTCCTCGCCGACAGCGACGAGAAGCCCGCCATCGAGATCGG
TCTGGTGCGCGCCCTGGCCGTACAGGTCGACGGCATCATCCTGTGCTCCCCTCGGATGTCCGACGCCGAGCTGCGCGAGG
CCGCGGGCTACGCACCTGTCGTCCTGGCCAACCGGCGCTCCGGACTGCTGCCCGCCAGCCTTGTGGACAACGCCGGCGGC
CTGCGCGAGGCGGTCGACCACCTCGTCGCGCTCGGCCACCGCCGGATCGGCTTCGTCGCCGGCCCGCGTTCCAGCTGGTC
GAGCGGCGAGCGGCTGCGCGCGCTGCGAGCGGCCGTCGACGCGGTACGTGTGGAGCTGGTGGAGATCGGCAACTTCGCCC
CGCAGTTCGAGGGCGGTGTCGCGGCAACCGACGCCATACTCGCCTCCGACGTCACCGCCGTCATCACGTACAACGACCTG
ATGGCACTGGGGCTGATCCAGACCCTGGCCTCCCGCGGCATCGAAGTGCCGCGACGGTTGAGCGTCATCGGCATCGACGA
CATCCCCACGTCTGCAATGGTGCACCCCTCGCTCACCACCCTCCGCATTCCCAAAGAGCAAGTCGGGCGCGTGTCCGTCG
ATCTCATGGTGCAGCTACTGGGCGACCCCCAGGCCCACTCCCGCCCGCAGCGGGAGCTTCCCACCAGGCTGATCGTCCGC
AACACCACCACCGTTCCCCTTCATTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-323)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.119

100

0.369

Multiple sequence alignment