Detailed information NTG0667468

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG53_RS00735
• Genome accession: NZ_CP094139
• Coordinates: 150787..151752 (+)
• Length: 321 a.a.
• NCBI ID: WP_245060608.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe036
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145787..156752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG53_RS00705 (MPG53_00705)	panD	147200..147550 (+)	351	WP_245060606.1	aspartate 1-decarboxylase	-
MPG53_RS00710 (MPG53_00710)	-	147561..147854 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG53_RS00715 (MPG53_00715)	-	147854..148849 (+)	996	WP_245061248.1	PDZ domain-containing protein	-
MPG53_RS00720 (MPG53_00720)	comB6	148857..149912 (+)	1056	WP_245061250.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG53_RS00725 (MPG53_00725)	comB7	149928..150053 (+)	126	WP_024117273.1	hypothetical protein	Machinery gene
MPG53_RS00730 (MPG53_00730)	comB8	150050..150787 (+)	738	WP_000660542.1	virB8 family protein	Machinery gene
MPG53_RS00735 (MPG53_00735)	comB9	150787..151752 (+)	966	WP_245060608.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG53_RS00740 (MPG53_00740)	comB10	151745..152881 (+)	1137	WP_245060610.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG53_RS00745 (MPG53_00745)	-	152951..154363 (+)	1413	WP_245060612.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG53_RS00750 (MPG53_00750)	gmd	154378..155523 (+)	1146	WP_245060613.1	GDP-mannose 4,6-dehydratase	-
MPG53_RS00755 (MPG53_00755)	-	155516..156448 (+)	933	WP_245060614.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36984.50 Da
• Isoelectric Point: 9.2075

>NTDB_id=667468 MPG53_RS00735 WP_245060608.1 150787..151752(+) (comB9) [Helicobacter pylori strain Hpfe036]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENTHTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667468 MPG53_RS00735 WP_245060608.1 150787..151752(+) (comB9) [Helicobacter pylori strain Hpfe036]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCAATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAACATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAATACCCACACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.938