Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG53_RS00730 Genome accession   NZ_CP094139
Coordinates   150050..150787 (+) Length   245 a.a.
NCBI ID   WP_000660542.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145050..155787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS00705 (MPG53_00705) panD 147200..147550 (+) 351 WP_245060606.1 aspartate 1-decarboxylase -
  MPG53_RS00710 (MPG53_00710) - 147561..147854 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG53_RS00715 (MPG53_00715) - 147854..148849 (+) 996 WP_245061248.1 PDZ domain-containing protein -
  MPG53_RS00720 (MPG53_00720) comB6 148857..149912 (+) 1056 WP_245061250.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG53_RS00725 (MPG53_00725) comB7 149928..150053 (+) 126 WP_024117273.1 hypothetical protein Machinery gene
  MPG53_RS00730 (MPG53_00730) comB8 150050..150787 (+) 738 WP_000660542.1 virB8 family protein Machinery gene
  MPG53_RS00735 (MPG53_00735) comB9 150787..151752 (+) 966 WP_245060608.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG53_RS00740 (MPG53_00740) comB10 151745..152881 (+) 1137 WP_245060610.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG53_RS00745 (MPG53_00745) - 152951..154363 (+) 1413 WP_245060612.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG53_RS00750 (MPG53_00750) gmd 154378..155523 (+) 1146 WP_245060613.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28537.74 Da        Isoelectric Point: 8.9546

>NTDB_id=667467 MPG53_RS00730 WP_000660542.1 150050..150787(+) (comB8) [Helicobacter pylori strain Hpfe036]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIAFILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667467 MPG53_RS00730 WP_000660542.1 150050..150787(+) (comB8) [Helicobacter pylori strain Hpfe036]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATCTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTTTTATCTTAGCGATTGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTATGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment