Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG53_RS00720 | Genome accession | NZ_CP094139 |
| Coordinates | 148857..149912 (+) | Length | 351 a.a. |
| NCBI ID | WP_245061250.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe036 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143857..154912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG53_RS00690 (MPG53_00690) | - | 144279..144692 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG53_RS00695 (MPG53_00695) | - | 144713..144988 (+) | 276 | WP_180528663.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG53_RS00700 (MPG53_00700) | - | 144988..147210 (+) | 2223 | WP_245060604.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG53_RS00705 (MPG53_00705) | panD | 147200..147550 (+) | 351 | WP_245060606.1 | aspartate 1-decarboxylase | - |
| MPG53_RS00710 (MPG53_00710) | - | 147561..147854 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG53_RS00715 (MPG53_00715) | - | 147854..148849 (+) | 996 | WP_245061248.1 | PDZ domain-containing protein | - |
| MPG53_RS00720 (MPG53_00720) | comB6 | 148857..149912 (+) | 1056 | WP_245061250.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG53_RS00725 (MPG53_00725) | comB7 | 149928..150053 (+) | 126 | WP_024117273.1 | hypothetical protein | Machinery gene |
| MPG53_RS00730 (MPG53_00730) | comB8 | 150050..150787 (+) | 738 | WP_000660542.1 | virB8 family protein | Machinery gene |
| MPG53_RS00735 (MPG53_00735) | comB9 | 150787..151752 (+) | 966 | WP_245060608.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG53_RS00740 (MPG53_00740) | comB10 | 151745..152881 (+) | 1137 | WP_245060610.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG53_RS00745 (MPG53_00745) | - | 152951..154363 (+) | 1413 | WP_245060612.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39885.85 Da Isoelectric Point: 8.8165
>NTDB_id=667465 MPG53_RS00720 WP_245061250.1 148857..149912(+) (comB6) [Helicobacter pylori strain Hpfe036]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSSVSSSMRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSSVSSSMRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667465 MPG53_RS00720 WP_245061250.1 148857..149912(+) (comB6) [Helicobacter pylori strain Hpfe036]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGTTTGAGCAACTTTTCTAACCACGCGCTTTCCTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGTTTGAGCAACTTTTCTAACCACGCGCTTTCCTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
98.291 |
100 |
0.983 |