Detailed information NTG0667428

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG13_RS00715
• Genome accession: NZ_CP094137
• Coordinates: 149219..150181 (+)
• Length: 320 a.a.
• NCBI ID: WP_180602210.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe038
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144219..155181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG13_RS00685 (MPG13_00685)	panD	145628..145978 (+)	351	WP_180602206.1	aspartate 1-decarboxylase	-
MPG13_RS00690 (MPG13_00690)	-	145989..146282 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG13_RS00695 (MPG13_00695)	-	146282..147277 (+)	996	WP_180602221.1	PDZ domain-containing protein	-
MPG13_RS00700 (MPG13_00700)	comB6	147283..148338 (+)	1056	WP_245083569.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG13_RS00705 (MPG13_00705)	comB7	148354..148479 (+)	126	WP_180508795.1	comB7 lipoprotein	Machinery gene
MPG13_RS00710 (MPG13_00710)	comB8	148476..149219 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG13_RS00715 (MPG13_00715)	comB9	149219..150181 (+)	963	WP_180602210.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG13_RS00720 (MPG13_00720)	comB10	150174..151310 (+)	1137	WP_245083571.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG13_RS00725 (MPG13_00725)	-	151380..152792 (+)	1413	WP_245083578.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG13_RS00730 (MPG13_00730)	gmd	152806..153951 (+)	1146	WP_220835406.1	GDP-mannose 4,6-dehydratase	-
MPG13_RS00735 (MPG13_00735)	-	153944..154876 (+)	933	WP_245083580.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36955.67 Da
• Isoelectric Point: 9.6404

>NTDB_id=667428 MPG13_RS00715 WP_180602210.1 149219..150181(+) (comB9) [Helicobacter pylori strain Hpfe038]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEEAITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667428 MPG13_RS00715 WP_180602210.1 149219..150181(+) (comB9) [Helicobacter pylori strain Hpfe038]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAGCCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGGCTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ATATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.947