Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG13_RS00700 | Genome accession | NZ_CP094137 |
| Coordinates | 147283..148338 (+) | Length | 351 a.a. |
| NCBI ID | WP_245083569.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe038 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 142283..153338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG13_RS00670 (MPG13_00670) | - | 142705..143118 (+) | 414 | WP_245083558.1 | universal stress protein | - |
| MPG13_RS00675 (MPG13_00675) | - | 143141..143416 (+) | 276 | WP_000784908.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG13_RS00680 (MPG13_00680) | - | 143416..145638 (+) | 2223 | WP_245083560.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG13_RS00685 (MPG13_00685) | panD | 145628..145978 (+) | 351 | WP_180602206.1 | aspartate 1-decarboxylase | - |
| MPG13_RS00690 (MPG13_00690) | - | 145989..146282 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG13_RS00695 (MPG13_00695) | - | 146282..147277 (+) | 996 | WP_180602221.1 | PDZ domain-containing protein | - |
| MPG13_RS00700 (MPG13_00700) | comB6 | 147283..148338 (+) | 1056 | WP_245083569.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG13_RS00705 (MPG13_00705) | comB7 | 148354..148479 (+) | 126 | WP_180508795.1 | comB7 lipoprotein | Machinery gene |
| MPG13_RS00710 (MPG13_00710) | comB8 | 148476..149219 (+) | 744 | WP_000660524.1 | virB8 family protein | Machinery gene |
| MPG13_RS00715 (MPG13_00715) | comB9 | 149219..150181 (+) | 963 | WP_180602210.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG13_RS00720 (MPG13_00720) | comB10 | 150174..151310 (+) | 1137 | WP_245083571.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG13_RS00725 (MPG13_00725) | - | 151380..152792 (+) | 1413 | WP_245083578.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39861.86 Da Isoelectric Point: 8.8165
>NTDB_id=667425 MPG13_RS00700 WP_245083569.1 147283..148338(+) (comB6) [Helicobacter pylori strain Hpfe038]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667425 MPG13_RS00700 WP_245083569.1 147283..148338(+) (comB6) [Helicobacter pylori strain Hpfe038]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |