Detailed information NTG0667385

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG28_RS00725
• Genome accession: NZ_CP094135
• Coordinates: 151742..152707 (+)
• Length: 321 a.a.
• NCBI ID: WP_245078465.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe040
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146742..157707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG28_RS00695 (MPG28_00695)	panD	148151..148501 (+)	351	WP_245078461.1	aspartate 1-decarboxylase	-
MPG28_RS00700 (MPG28_00700)	-	148512..148805 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG28_RS00705 (MPG28_00705)	-	148805..149800 (+)	996	WP_245078463.1	PDZ domain-containing protein	-
MPG28_RS00710 (MPG28_00710)	comB6	149806..150861 (+)	1056	WP_245079204.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG28_RS00715 (MPG28_00715)	comB7	150877..151002 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG28_RS00720 (MPG28_00720)	comB8	150999..151742 (+)	744	WP_000660529.1	virB8 family protein	Machinery gene
MPG28_RS00725 (MPG28_00725)	comB9	151742..152707 (+)	966	WP_245078465.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG28_RS00730 (MPG28_00730)	comB10	152700..153836 (+)	1137	WP_245078467.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG28_RS00735 (MPG28_00735)	-	153902..155314 (+)	1413	WP_245078470.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG28_RS00740 (MPG28_00740)	gmd	155328..156473 (+)	1146	WP_245078472.1	GDP-mannose 4,6-dehydratase	-
MPG28_RS00745 (MPG28_00745)	-	156466..157398 (+)	933	WP_245078474.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36787.35 Da
• Isoelectric Point: 9.6457

>NTDB_id=667385 MPG28_RS00725 WP_245078465.1 151742..152707(+) (comB9) [Helicobacter pylori strain Hpfe040]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKGETKGEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667385 MPG28_RS00725 WP_245078465.1 151742..152707(+) (comB9) [Helicobacter pylori strain Hpfe040]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTAGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGGAGAAACCAAAGGAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTATATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.935