Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG28_RS00710 | Genome accession | NZ_CP094135 |
| Coordinates | 149806..150861 (+) | Length | 351 a.a. |
| NCBI ID | WP_245079204.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe040 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144806..155861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG28_RS00680 (MPG28_00680) | - | 145243..145656 (+) | 414 | WP_001023006.1 | universal stress protein | - |
| MPG28_RS00685 (MPG28_00685) | - | 145664..145939 (+) | 276 | WP_245078457.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG28_RS00690 (MPG28_00690) | - | 145939..148161 (+) | 2223 | WP_245078459.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG28_RS00695 (MPG28_00695) | panD | 148151..148501 (+) | 351 | WP_245078461.1 | aspartate 1-decarboxylase | - |
| MPG28_RS00700 (MPG28_00700) | - | 148512..148805 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG28_RS00705 (MPG28_00705) | - | 148805..149800 (+) | 996 | WP_245078463.1 | PDZ domain-containing protein | - |
| MPG28_RS00710 (MPG28_00710) | comB6 | 149806..150861 (+) | 1056 | WP_245079204.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG28_RS00715 (MPG28_00715) | comB7 | 150877..151002 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG28_RS00720 (MPG28_00720) | comB8 | 150999..151742 (+) | 744 | WP_000660529.1 | virB8 family protein | Machinery gene |
| MPG28_RS00725 (MPG28_00725) | comB9 | 151742..152707 (+) | 966 | WP_245078465.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG28_RS00730 (MPG28_00730) | comB10 | 152700..153836 (+) | 1137 | WP_245078467.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG28_RS00735 (MPG28_00735) | - | 153902..155314 (+) | 1413 | WP_245078470.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39911.95 Da Isoelectric Point: 8.8165
>NTDB_id=667382 MPG28_RS00710 WP_245079204.1 149806..150861(+) (comB6) [Helicobacter pylori strain Hpfe040]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNLFSASTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYAISFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIMGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNLFSASTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYAISFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIMGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667382 MPG28_RS00710 WP_245079204.1 149806..150861(+) (comB6) [Helicobacter pylori strain Hpfe040]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCATTAGTT
TTATCAGCGATTTGAGTCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATGGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCATTAGTT
TTATCAGCGATTTGAGTCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATGGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |