Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG28_RS00720 Genome accession   NZ_CP094135
Coordinates   150999..151742 (+) Length   247 a.a.
NCBI ID   WP_000660529.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe040     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145999..156742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG28_RS00695 (MPG28_00695) panD 148151..148501 (+) 351 WP_245078461.1 aspartate 1-decarboxylase -
  MPG28_RS00700 (MPG28_00700) - 148512..148805 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG28_RS00705 (MPG28_00705) - 148805..149800 (+) 996 WP_245078463.1 PDZ domain-containing protein -
  MPG28_RS00710 (MPG28_00710) comB6 149806..150861 (+) 1056 WP_245079204.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG28_RS00715 (MPG28_00715) comB7 150877..151002 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG28_RS00720 (MPG28_00720) comB8 150999..151742 (+) 744 WP_000660529.1 virB8 family protein Machinery gene
  MPG28_RS00725 (MPG28_00725) comB9 151742..152707 (+) 966 WP_245078465.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG28_RS00730 (MPG28_00730) comB10 152700..153836 (+) 1137 WP_245078467.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG28_RS00735 (MPG28_00735) - 153902..155314 (+) 1413 WP_245078470.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG28_RS00740 (MPG28_00740) gmd 155328..156473 (+) 1146 WP_245078472.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=667384 MPG28_RS00720 WP_000660529.1 150999..151742(+) (comB8) [Helicobacter pylori strain Hpfe040]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667384 MPG28_RS00720 WP_000660529.1 150999..151742(+) (comB8) [Helicobacter pylori strain Hpfe040]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment