Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OG584_RS29525 | Genome accession | NZ_CP108826 |
| Coordinates | 6691874..6692956 (+) | Length | 360 a.a. |
| NCBI ID | WP_405782382.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00859 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 6686874..6697956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG584_RS29495 (OG584_29520) | - | 6687542..6688090 (+) | 549 | WP_405782373.1 | hypothetical protein | - |
| OG584_RS29500 (OG584_29525) | pdxS | 6688220..6689146 (+) | 927 | WP_405782375.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| OG584_RS29505 (OG584_29530) | pdxT | 6689146..6689736 (+) | 591 | WP_405782377.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| OG584_RS29510 (OG584_29535) | - | 6689799..6690551 (+) | 753 | WP_405782378.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OG584_RS29515 (OG584_29540) | ruvC | 6690709..6691242 (+) | 534 | WP_328316472.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OG584_RS29520 (OG584_29545) | ruvA | 6691239..6691859 (+) | 621 | WP_405782380.1 | Holliday junction branch migration protein RuvA | - |
| OG584_RS29525 (OG584_29550) | ruvB | 6691874..6692956 (+) | 1083 | WP_405782382.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OG584_RS29530 (OG584_29555) | yajC | 6693124..6693600 (+) | 477 | WP_405782383.1 | preprotein translocase subunit YajC | - |
| OG584_RS29535 (OG584_29560) | secD | 6693751..6695496 (+) | 1746 | WP_405782384.1 | protein translocase subunit SecD | - |
| OG584_RS29540 (OG584_29565) | secF | 6695498..6696607 (+) | 1110 | WP_405782386.1 | protein translocase subunit SecF | - |
| OG584_RS29545 (OG584_29570) | - | 6696604..6697152 (+) | 549 | WP_405782387.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 38509.97 Da Isoelectric Point: 4.7195
>NTDB_id=667372 OG584_RS29525 WP_405782382.1 6691874..6692956(+) (ruvB) [Streptomyces sp. NBC_00859]
MLPPQNEWDDTAPETEERLVGADADGEDQAVEAALRPKDLDEFVGQEKVRLQLDLVLRAARQRGATADHVLLSGAPGLGK
TTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQDGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAI
PLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYEPAELERVIHRSARLLDVEIGDDGAAEIAGRSRGTPRIANRLLR
RVRDYAQVEADGVITREIARTALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVRE
GLLARTPRGRVATPAAWAHLGLVPPQGGAAGKGQAGLFGA
MLPPQNEWDDTAPETEERLVGADADGEDQAVEAALRPKDLDEFVGQEKVRLQLDLVLRAARQRGATADHVLLSGAPGLGK
TTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQDGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAI
PLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYEPAELERVIHRSARLLDVEIGDDGAAEIAGRSRGTPRIANRLLR
RVRDYAQVEADGVITREIARTALAVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVRE
GLLARTPRGRVATPAAWAHLGLVPPQGGAAGKGQAGLFGA
Nucleotide
Download Length: 1083 bp
>NTDB_id=667372 OG584_RS29525 WP_405782382.1 6691874..6692956(+) (ruvB) [Streptomyces sp. NBC_00859]
ATGCTGCCTCCTCAGAACGAGTGGGACGACACCGCCCCCGAAACCGAAGAGCGCCTGGTGGGAGCCGACGCCGACGGCGA
GGACCAGGCCGTCGAAGCCGCGCTGCGCCCCAAGGACCTGGATGAGTTCGTGGGGCAGGAGAAGGTCCGGCTCCAGCTCG
ACCTGGTCCTGCGAGCGGCCAGGCAGCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGTGCTCCTGGCCTGGGGAAG
ACCACCCTTTCGATGATCATCGCGGCCGAGATGGGCGCTCCGATCCGGATCACGTCCGGCCCCGCGATCCAGCACGCCGG
CGACCTGGCCGCGATCCTCTCCTCGCTCCAGGACGGTGAGGTTCTCTTCCTCGACGAGATCCACCGGATGTCCAGGCCCG
CCGAGGAAATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATC
CCGCTTGAGCTGCCGCCCTTCACGCTGGTCGGCGCCACCACCAGGGCCGGGCTGCTGCCGCCGCCGCTGCGCGACCGCTT
CGGGTTCACCGGCCACATGGAGTTCTACGAACCGGCCGAGCTGGAGCGCGTCATCCACCGCTCGGCGCGGCTGCTGGACG
TCGAGATCGGTGATGACGGCGCGGCGGAGATCGCAGGACGCTCCCGCGGCACCCCCCGGATCGCCAACCGGCTGCTGCGC
CGGGTCCGTGACTACGCGCAGGTCGAGGCCGACGGGGTGATCACCAGAGAGATCGCGCGTACGGCGCTCGCGGTGTACGA
GGTTGACGCCCGCGGACTCGACCGGCTGGACCGCGCGGTCCTCCAGGCCCTGCTCAAGCTGTTCGGCGGCGGGCCGGTCG
GACTCTCGACGCTCGCTGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCGTTCCTGGTGCGCGAG
GGGCTGCTGGCGCGCACCCCGCGCGGCCGGGTTGCCACACCGGCCGCCTGGGCACATCTCGGGCTCGTGCCTCCGCAGGG
AGGCGCTGCGGGAAAGGGACAAGCGGGTCTGTTCGGGGCGTGA
ATGCTGCCTCCTCAGAACGAGTGGGACGACACCGCCCCCGAAACCGAAGAGCGCCTGGTGGGAGCCGACGCCGACGGCGA
GGACCAGGCCGTCGAAGCCGCGCTGCGCCCCAAGGACCTGGATGAGTTCGTGGGGCAGGAGAAGGTCCGGCTCCAGCTCG
ACCTGGTCCTGCGAGCGGCCAGGCAGCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGTGCTCCTGGCCTGGGGAAG
ACCACCCTTTCGATGATCATCGCGGCCGAGATGGGCGCTCCGATCCGGATCACGTCCGGCCCCGCGATCCAGCACGCCGG
CGACCTGGCCGCGATCCTCTCCTCGCTCCAGGACGGTGAGGTTCTCTTCCTCGACGAGATCCACCGGATGTCCAGGCCCG
CCGAGGAAATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATC
CCGCTTGAGCTGCCGCCCTTCACGCTGGTCGGCGCCACCACCAGGGCCGGGCTGCTGCCGCCGCCGCTGCGCGACCGCTT
CGGGTTCACCGGCCACATGGAGTTCTACGAACCGGCCGAGCTGGAGCGCGTCATCCACCGCTCGGCGCGGCTGCTGGACG
TCGAGATCGGTGATGACGGCGCGGCGGAGATCGCAGGACGCTCCCGCGGCACCCCCCGGATCGCCAACCGGCTGCTGCGC
CGGGTCCGTGACTACGCGCAGGTCGAGGCCGACGGGGTGATCACCAGAGAGATCGCGCGTACGGCGCTCGCGGTGTACGA
GGTTGACGCCCGCGGACTCGACCGGCTGGACCGCGCGGTCCTCCAGGCCCTGCTCAAGCTGTTCGGCGGCGGGCCGGTCG
GACTCTCGACGCTCGCTGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCGTTCCTGGTGCGCGAG
GGGCTGCTGGCGCGCACCCCGCGCGGCCGGGTTGCCACACCGGCCGCCTGGGCACATCTCGGGCTCGTGCCTCCGCAGGG
AGGCGCTGCGGGAAAGGGACAAGCGGGTCTGTTCGGGGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.474 |
91.944 |
0.492 |
| ruvB | Synechocystis sp. PCC 6803 |
50.581 |
95.556 |
0.483 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52.469 |
90 |
0.472 |
| ruvB | Streptococcus pneumoniae R6 |
52.469 |
90 |
0.472 |
| ruvB | Streptococcus pneumoniae D39 |
52.469 |
90 |
0.472 |
| ruvB | Helicobacter pylori 26695 |
49.843 |
88.611 |
0.442 |