Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG584_RS24645 Genome accession   NZ_CP108826
Coordinates   5630956..5632689 (-) Length   577 a.a.
NCBI ID   WP_405780988.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5625956..5637689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS24635 (OG584_24665) - 5627594..5628835 (+) 1242 WP_405780986.1 sigma-70 family RNA polymerase sigma factor -
  OG584_RS24640 (OG584_24670) rcrQ 5629034..5630956 (-) 1923 WP_405780987.1 ABC transporter ATP-binding protein Regulator
  OG584_RS24645 (OG584_24675) rcrP 5630956..5632689 (-) 1734 WP_405780988.1 ABC transporter ATP-binding protein Regulator
  OG584_RS24650 (OG584_24680) - 5632821..5634290 (-) 1470 WP_405780989.1 FGGY family carbohydrate kinase -
  OG584_RS24655 (OG584_24685) - 5634320..5634619 (-) 300 WP_405780990.1 YtxH domain-containing protein -
  OG584_RS24675 (OG584_24705) - 5635882..5636097 (+) 216 WP_405780992.1 hypothetical protein -
  OG584_RS24680 (OG584_24710) - 5636330..5636719 (+) 390 WP_405780994.1 hypothetical protein -
  OG584_RS24685 (OG584_24715) - 5636746..5637339 (+) 594 WP_405780995.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62533.91 Da        Isoelectric Point: 6.1934

>NTDB_id=667362 OG584_RS24645 WP_405780988.1 5630956..5632689(-) (rcrP) [Streptomyces sp. NBC_00859]
MLISLLRAYLRPYKKPMALLALLQLFQTCATLYLPTLNADIIDNGVVKGDSGYILSFGGLMIAISVVQVICNMGAVYFGA
RTAAALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDAVNRVLREQITGNRVIRAFVKDAYEKERFEGANSDLTEVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PLEPVTELARHGHLEIRGAGFKYPGAEASVLQEVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKGFVEKLEGRLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRTALRRETAEATVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=667362 OG584_RS24645 WP_405780988.1 5630956..5632689(-) (rcrP) [Streptomyces sp. NBC_00859]
GTGCTCATTTCACTTCTGCGGGCCTATTTGCGCCCGTACAAGAAACCCATGGCTCTGCTGGCGCTGCTTCAGCTGTTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGCGACTCGGGTTACA
TCCTGAGCTTCGGCGGTCTCATGATCGCCATCAGCGTGGTCCAGGTGATCTGCAACATGGGCGCCGTCTACTTCGGGGCC
CGTACGGCCGCCGCGCTCGGCCGGGACATCCGCGCCGGAGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
GCACTTCGGCGCACCCTCACTCATCACCCGCACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGGCAGGACGTGCCGCTCTCGCTCGTG
CTGATCGCGGTGGTCCCGGTCATGCTCGTGCTCGTTTCCCTGATCGTCCGGCGGATGCGTCCGCTGTTCCGCAAGATGCA
GGTCCGGCTCGACGCGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGTAACCGCGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCGAGGGCGCCAACAGCGATCTGACCGAAGTGTCCCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTCATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGCGATGCAGATCGGGGCCCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAACGGATCCAGGAGGTCCTCGGCACCGACTCCAGCGTGGTGCCG
CCGCTGGAGCCGGTCACGGAGCTGGCCAGGCACGGCCATCTGGAAATCCGCGGGGCCGGGTTCAAGTACCCCGGCGCCGA
GGCCTCGGTGCTGCAGGAGGTCGCTCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGCCACGGGCGGGGAGGTGCTGGTGGACGGCACCGACGTACGC
ACGCTCGACCCCGTGCTGCTGGCGAAAACGGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGTTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TCGAGAAGCTCGAAGGCAGGCTGAACGCACCGATCGCCCAGGGCGGTACCAACGTCTCCGGCGGTCAGCGTCAGCGGCTG
GCGATCGCCAGGACGCTCGTGCAGCAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCTCTGGACTACGCGACCGA
CGCGGCACTGCGGACTGCTCTGCGGCGCGAGACGGCGGAGGCCACGGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAAGGCCGGGTCGTCGGAACCGGCCGCCATCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406

Multiple sequence alignment