Detailed information NTG0667362

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG50_RS00710
• Genome accession: NZ_CP094134
• Coordinates: 151007..151972 (+)
• Length: 321 a.a.
• NCBI ID: WP_245032368.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe048
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146007..156972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG50_RS00680 (MPG50_00680)	panD	147426..147776 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG50_RS00685 (MPG50_00685)	-	147787..148080 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG50_RS00690 (MPG50_00690)	-	148080..149075 (+)	996	WP_245033084.1	PDZ domain-containing protein	-
MPG50_RS00695 (MPG50_00695)	comB6	149083..150138 (+)	1056	WP_245033086.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG50_RS00700 (MPG50_00700)	comB7	150154..150267 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPG50_RS00705 (MPG50_00705)	comB8	150264..151007 (+)	744	WP_245032366.1	virB8 family protein	Machinery gene
MPG50_RS00710 (MPG50_00710)	comB9	151007..151972 (+)	966	WP_245032368.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG50_RS00715 (MPG50_00715)	comB10	151965..153101 (+)	1137	WP_245032370.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG50_RS00720 (MPG50_00720)	-	153171..154583 (+)	1413	WP_245032372.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG50_RS00725 (MPG50_00725)	gmd	154598..155743 (+)	1146	WP_245032374.1	GDP-mannose 4,6-dehydratase	-
MPG50_RS00730 (MPG50_00730)	-	155736..156668 (+)	933	WP_001002911.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36857.41 Da
• Isoelectric Point: 9.3756

>NTDB_id=667362 MPG50_RS00710 WP_245032368.1 151007..151972(+) (comB9) [Helicobacter pylori strain Hpfe048]
MRKVLCTLAGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667362 MPG50_RS00710 WP_245032368.1 151007..151972(+) (comB9) [Helicobacter pylori strain Hpfe048]
ATGCGTAAGGTTTTATGCACTCTTGCGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAATGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTTTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGCTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.935