Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG584_RS23935 Genome accession   NZ_CP108826
Coordinates   5465885..5466568 (+) Length   227 a.a.
NCBI ID   WP_405780782.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5460885..5471568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS23910 (OG584_23935) - 5462307..5462501 (+) 195 WP_164261160.1 hypothetical protein -
  OG584_RS23925 (OG584_23950) tig 5463534..5464922 (+) 1389 WP_405780781.1 trigger factor -
  OG584_RS23930 (OG584_23955) - 5465228..5465833 (+) 606 WP_405784247.1 ATP-dependent Clp protease proteolytic subunit -
  OG584_RS23935 (OG584_23960) clpP 5465885..5466568 (+) 684 WP_405780782.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG584_RS23940 (OG584_23965) clpX 5466725..5468017 (+) 1293 WP_405780783.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG584_RS23945 (OG584_23970) - 5468120..5469142 (-) 1023 WP_405780784.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24869.28 Da        Isoelectric Point: 4.5097

>NTDB_id=667359 OG584_RS23935 WP_405780782.1 5465885..5466568(+) (clpP) [Streptomyces sp. NBC_00859]
MVNTSMNDFSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPLEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMST

Nucleotide


Download         Length: 684 bp        

>NTDB_id=667359 OG584_RS23935 WP_405780782.1 5465885..5466568(+) (clpP) [Streptomyces sp. NBC_00859]
ATGGTGAACACCAGCATGAACGACTTCTCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGTGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCGATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCGGTCCTGCTGGCGGCCGGTACGCCCG
GAAAGCGCATGGCACTGCCCAACGCCCGTGTGCTGATCCACCAGCCCTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGGATGCGTACCCAGTTGGAAGACCTGCTGGCCAAGCACTCCACGACGCCGCT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCTGAGGACGCCCTCGCCTACGGGCTCGTCGACCAGA
TCGTTTCGACGCGTAAGGGCTCCGTGGGAATGATGTCCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

83.26

0.405
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374

Multiple sequence alignment