Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG584_RS24640 Genome accession   NZ_CP108826
Coordinates   5629034..5630956 (-) Length   640 a.a.
NCBI ID   WP_405780987.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5624034..5635956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS24625 (OG584_24655) - 5624130..5625392 (+) 1263 WP_405780984.1 NAD(P)/FAD-dependent oxidoreductase -
  OG584_RS24630 (OG584_24660) dnaG 5625538..5627439 (+) 1902 WP_405780985.1 DNA primase -
  OG584_RS24635 (OG584_24665) - 5627594..5628835 (+) 1242 WP_405780986.1 sigma-70 family RNA polymerase sigma factor -
  OG584_RS24640 (OG584_24670) rcrQ 5629034..5630956 (-) 1923 WP_405780987.1 ABC transporter ATP-binding protein Regulator
  OG584_RS24645 (OG584_24675) rcrP 5630956..5632689 (-) 1734 WP_405780988.1 ABC transporter ATP-binding protein Regulator
  OG584_RS24650 (OG584_24680) - 5632821..5634290 (-) 1470 WP_405780989.1 FGGY family carbohydrate kinase -
  OG584_RS24655 (OG584_24685) - 5634320..5634619 (-) 300 WP_405780990.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68948.64 Da        Isoelectric Point: 5.9017

>NTDB_id=667361 OG584_RS24640 WP_405780987.1 5629034..5630956(-) (rcrQ) [Streptomyces sp. NBC_00859]
MAGPGGRMMAGPTQKSMDFKGSGKRLLRMLAQDRPALLSMLISVVCSVALSVVGPKILGRATDLIFAGIIGQQLPAGTTK
AQALKALHAKGQGAMADMLSGVDFTPGKGIDFSQVGQILLLALVAFACAGLLMLVTTRLAARIINQAMYRMREDIQAKLS
RLPLSYFDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLLNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQAESAEAFREQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQEPDSATPERPEALRGSISLDKV
AFRYEADKPLIDGLSLSVEPGHTVAIVGPTGAGKTTLVNLIMRFYEVTGGQITLDGTDIARMTREDLRSGIGMVLQDTWL
FGGTIADNIAYGSAHAVTREEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGSHEELLAADGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=667361 OG584_RS24640 WP_405780987.1 5629034..5630956(-) (rcrQ) [Streptomyces sp. NBC_00859]
ATGGCCGGTCCTGGTGGACGCATGATGGCGGGACCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAACGACTGCT
GCGGATGCTCGCGCAAGACCGTCCCGCGCTGCTCTCGATGCTGATATCCGTGGTCTGCAGCGTCGCTCTCTCGGTCGTGG
GACCGAAGATCCTGGGCCGGGCGACCGACCTGATCTTCGCCGGGATCATCGGGCAGCAGCTGCCCGCCGGCACGACCAAG
GCGCAGGCCCTGAAGGCTCTGCACGCCAAGGGCCAGGGCGCGATGGCCGACATGCTCTCGGGTGTGGACTTCACTCCGGG
CAAGGGCATCGACTTCTCCCAGGTGGGGCAGATCCTGCTGCTCGCGCTCGTGGCCTTCGCCTGCGCGGGTCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACCAGGCCATGTACCGGATGCGTGAGGACATCCAGGCGAAGCTCTCT
CGGCTGCCGCTGTCGTACTTCGACAAGGCGAAGCGCGGCGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACGATGCAGCAGACGATGGGACAGCTGCTGAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTCTCGGTGCTGGTGGCGACCCGCGTCGGGAAGCGGTCC
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACGCCCT
GGTAAAGATCTTCGGGCGGCAGGCGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCGCTGTACGAAGCGGGGTTCA
AGGCCCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTATGTGCTGGTGGCGGTCATC
GGCGGGCTGCGGGTCGCTTCCGGTTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCATCGATGGCCAACCTGGTGCAGTCCGGTGTGGCGTCCGCGGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGGAGCCCGACTCGGCCACCCCCGAGCGCCCGGAGGCGCTGCGCGGCAGCATCTCGCTGGACAAGGTC
GCCTTCAGGTACGAGGCGGACAAGCCGCTCATCGACGGTCTGTCGCTCTCGGTCGAACCGGGACACACGGTCGCGATCGT
CGGGCCCACCGGTGCTGGCAAGACGACGCTGGTCAATCTGATCATGCGGTTCTACGAGGTGACCGGCGGGCAGATCACGC
TCGACGGAACCGACATCGCCAGGATGACCCGCGAGGACCTGCGCTCCGGGATCGGCATGGTGCTGCAGGACACCTGGCTC
TTCGGCGGCACGATCGCGGACAACATCGCGTACGGCTCCGCGCACGCCGTCACCCGCGAGGAGATCGAGGAGGCGGCCCG
CGCGGCGCACGCCGACCGCTTCATCCGCACGCTCCCCGAGGGCTACGACACGGTGATCGACGACGAGGGCACAGGGGTGA
GCGCGGGTGAGAAGCAGCTGATCACGATCGCGCGCGCCTTCCTTTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTCGACACCCGTACCGAGGTCCTGATCCAGAAGGCGATGGCCCGCCTGGCGCACGGCCGCACGAGCTTCGTCAT
CGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTGATTCTGGTGATGGAGAACGGGGCGATCGTGGAACAGGGTTCGC
ACGAGGAGCTGCTGGCCGCCGACGGGGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTGGTGGAAGTGGAT
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.374

93.281

0.386

Multiple sequence alignment