Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG57_RS00745 | Genome accession | NZ_CP094132 |
| Coordinates | 154683..155819 (+) | Length | 378 a.a. |
| NCBI ID | WP_245081243.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe051 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 149683..160819
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG57_RS00710 (MPG57_00710) | panD | 150135..150485 (+) | 351 | WP_245081236.1 | aspartate 1-decarboxylase | - |
| MPG57_RS00715 (MPG57_00715) | - | 150496..150789 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG57_RS00720 (MPG57_00720) | - | 150789..151784 (+) | 996 | WP_245081760.1 | PDZ domain-containing protein | - |
| MPG57_RS00725 (MPG57_00725) | comB6 | 151792..152847 (+) | 1056 | WP_245081238.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG57_RS00730 (MPG57_00730) | comB7 | 152863..152988 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG57_RS00735 (MPG57_00735) | comB8 | 152985..153728 (+) | 744 | WP_245081240.1 | virB8 family protein | Machinery gene |
| MPG57_RS00740 (MPG57_00740) | comB9 | 153728..154690 (+) | 963 | WP_245081242.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG57_RS00745 (MPG57_00745) | comB10 | 154683..155819 (+) | 1137 | WP_245081243.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG57_RS00750 (MPG57_00750) | - | 155889..157301 (+) | 1413 | WP_245081245.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG57_RS00755 (MPG57_00755) | gmd | 157316..158461 (+) | 1146 | WP_245081246.1 | GDP-mannose 4,6-dehydratase | - |
| MPG57_RS00760 (MPG57_00760) | - | 158454..159386 (+) | 933 | WP_245081247.1 | GDP-L-fucose synthase | - |
| MPG57_RS00765 (MPG57_00765) | hypE | 159655..160653 (-) | 999 | WP_245081249.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42116.78 Da Isoelectric Point: 9.9837
>NTDB_id=667322 MPG57_RS00745 WP_245081243.1 154683..155819(+) (comB10) [Helicobacter pylori strain Hpfe051]
MNKWIKGALVFAGGFATIITISLIYHQKAKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPLIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFAGGFATIITISLIYHQKAKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPLIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667322 MPG57_RS00745 WP_245081243.1 154683..155819(+) (comB10) [Helicobacter pylori strain Hpfe051]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGGCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGTGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGCAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGGCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAATAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGTGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |