Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG57_RS00725 | Genome accession | NZ_CP094132 |
| Coordinates | 151792..152847 (+) | Length | 351 a.a. |
| NCBI ID | WP_245081238.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe051 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 146792..157847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG57_RS00690 (MPG57_00690) | - | 146885..147103 (-) | 219 | WP_245081228.1 | hypothetical protein | - |
| MPG57_RS00695 (MPG57_00695) | - | 147227..147640 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG57_RS00700 (MPG57_00700) | - | 147648..147923 (+) | 276 | WP_180588674.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG57_RS00705 (MPG57_00705) | - | 147923..150145 (+) | 2223 | WP_245081234.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG57_RS00710 (MPG57_00710) | panD | 150135..150485 (+) | 351 | WP_245081236.1 | aspartate 1-decarboxylase | - |
| MPG57_RS00715 (MPG57_00715) | - | 150496..150789 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG57_RS00720 (MPG57_00720) | - | 150789..151784 (+) | 996 | WP_245081760.1 | PDZ domain-containing protein | - |
| MPG57_RS00725 (MPG57_00725) | comB6 | 151792..152847 (+) | 1056 | WP_245081238.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG57_RS00730 (MPG57_00730) | comB7 | 152863..152988 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG57_RS00735 (MPG57_00735) | comB8 | 152985..153728 (+) | 744 | WP_245081240.1 | virB8 family protein | Machinery gene |
| MPG57_RS00740 (MPG57_00740) | comB9 | 153728..154690 (+) | 963 | WP_245081242.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG57_RS00745 (MPG57_00745) | comB10 | 154683..155819 (+) | 1137 | WP_245081243.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG57_RS00750 (MPG57_00750) | - | 155889..157301 (+) | 1413 | WP_245081245.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39913.91 Da Isoelectric Point: 8.8165
>NTDB_id=667318 MPG57_RS00725 WP_245081238.1 151792..152847(+) (comB6) [Helicobacter pylori strain Hpfe051]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIMGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTLPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIMGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTLPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667318 MPG57_RS00725 WP_245081238.1 151792..152847(+) (comB6) [Helicobacter pylori strain Hpfe051]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGTGCGCTAACAGAAGCGTTATTGTTTGTAGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATGGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCTACCTGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGTGCGCTAACAGAAGCGTTATTGTTTGTAGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATGGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCTACCTGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.011 |
100 |
0.96 |