Detailed information    

insolico Bioinformatically predicted

Overview


Name   dinR/lexA   Type   Regulator
Locus tag   OG584_RS07920 Genome accession   NZ_CP108826
Coordinates   1935662..1936456 (+) Length   264 a.a.
NCBI ID   WP_405776446.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1930662..1941456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS07910 (OG584_07890) - 1931629..1934505 (-) 2877 WP_405776442.1 vitamin B12-dependent ribonucleotide reductase -
  OG584_RS07915 (OG584_07895) nrdR 1934631..1935143 (-) 513 WP_405776444.1 transcriptional regulator NrdR -
  OG584_RS07920 (OG584_07900) dinR/lexA 1935662..1936456 (+) 795 WP_405776446.1 transcriptional repressor LexA Regulator
  OG584_RS07925 (OG584_07905) - 1936630..1938600 (-) 1971 WP_405776448.1 ATP-dependent DNA helicase -
  OG584_RS07930 (OG584_07910) - 1938639..1940444 (-) 1806 WP_405776450.1 IucA/IucC family protein -
  OG584_RS07935 (OG584_07915) - 1940671..1941411 (-) 741 WP_405783925.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 264 a.a.        Molecular weight: 28575.37 Da        Isoelectric Point: 7.4240

>NTDB_id=667320 OG584_RS07920 WP_405776446.1 1935662..1936456(+) (dinR/lexA) [Streptomyces sp. NBC_00859]
MTTTADSATITAQDRSQNRLEPVHAMNDAATGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=667320 OG584_RS07920 WP_405776446.1 1935662..1936456(+) (dinR/lexA) [Streptomyces sp. NBC_00859]
GTGACCACGACCGCAGACAGCGCCACCATCACTGCCCAGGACCGTTCCCAGAACCGACTCGAGCCGGTGCATGCCATGAA
CGACGCGGCAACGGGCCCCGAGGGGCAACTGCCCCCGCGCCCCGCGCGCTCACTGCCCGGCCGACCTCCCGGCATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGACGGGTGATCGAGGTGATCAGGGATTCCGTGCAACGCCGTGGATACCCG
CCCTCCATGCGCGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCGTCCGTCGCTCATCAGCTGATGGCGCTGGAGCG
CAAGGGCTTCCTTCGCCGGGACCCGCACCGCCCGCGTGCGTACGAGGTCCGGGGCTCCGACCAGCCGAGCACCCAGACGA
CCGACACGACGGGCAAGCCCGCCGCGTCGTACGTCCCACTGGTGGGCCGGATTGCCGCCGGTGGGCCGATCCTGGCAGAG
GAGTCGGTGGAGGATGTCTTCCCGCTCCCCCGGCAACTGGTCGGCGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCAGCGATCTGCGACGGCGACTGGGTCACCGTACGGCGCCAGCCTGTTGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGTTGCTGCCGCACAAT
GCCGCTTACCAGCCGATCCCCGGTGACGAGGCCACGATCCTCGGCAAGGTGGTGGCGGTGCTCCGGCGCGTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371


Multiple sequence alignment