Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG57_RS00735 Genome accession   NZ_CP094132
Coordinates   152985..153728 (+) Length   247 a.a.
NCBI ID   WP_245081240.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147985..158728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS00710 (MPG57_00710) panD 150135..150485 (+) 351 WP_245081236.1 aspartate 1-decarboxylase -
  MPG57_RS00715 (MPG57_00715) - 150496..150789 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG57_RS00720 (MPG57_00720) - 150789..151784 (+) 996 WP_245081760.1 PDZ domain-containing protein -
  MPG57_RS00725 (MPG57_00725) comB6 151792..152847 (+) 1056 WP_245081238.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG57_RS00730 (MPG57_00730) comB7 152863..152988 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG57_RS00735 (MPG57_00735) comB8 152985..153728 (+) 744 WP_245081240.1 virB8 family protein Machinery gene
  MPG57_RS00740 (MPG57_00740) comB9 153728..154690 (+) 963 WP_245081242.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG57_RS00745 (MPG57_00745) comB10 154683..155819 (+) 1137 WP_245081243.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG57_RS00750 (MPG57_00750) - 155889..157301 (+) 1413 WP_245081245.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG57_RS00755 (MPG57_00755) gmd 157316..158461 (+) 1146 WP_245081246.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28734.03 Da        Isoelectric Point: 9.2316

>NTDB_id=667320 MPG57_RS00735 WP_245081240.1 152985..153728(+) (comB8) [Helicobacter pylori strain Hpfe051]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEYLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667320 MPG57_RS00735 WP_245081240.1 152985..153728(+) (comB8) [Helicobacter pylori strain Hpfe051]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTGTTAATCAGTGTTTTACCCTTGCAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTATGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGAGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAATATTTGATTAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGTAGCTAAACTCATGAATGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment