Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG30_RS00740 | Genome accession | NZ_CP094131 |
| Coordinates | 155747..156883 (+) | Length | 378 a.a. |
| NCBI ID | WP_245047881.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe052 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 150747..161883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG30_RS00705 (MPG30_00705) | panD | 151213..151566 (+) | 354 | WP_021307646.1 | aspartate 1-decarboxylase | - |
| MPG30_RS00710 (MPG30_00710) | - | 151569..151862 (+) | 294 | WP_131128566.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG30_RS00715 (MPG30_00715) | - | 151862..152857 (+) | 996 | WP_245048345.1 | PDZ domain-containing protein | - |
| MPG30_RS00720 (MPG30_00720) | comB6 | 152865..153920 (+) | 1056 | WP_231192655.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG30_RS00725 (MPG30_00725) | comB7 | 153936..154061 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG30_RS00730 (MPG30_00730) | comB8 | 154058..154795 (+) | 738 | WP_058337650.1 | virB8 family protein | Machinery gene |
| MPG30_RS00735 (MPG30_00735) | comB9 | 154795..155754 (+) | 960 | WP_245047879.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG30_RS00740 (MPG30_00740) | comB10 | 155747..156883 (+) | 1137 | WP_245047881.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG30_RS00745 (MPG30_00745) | - | 156953..158365 (+) | 1413 | WP_245047883.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG30_RS00750 (MPG30_00750) | gmd | 158379..159524 (+) | 1146 | WP_245047885.1 | GDP-mannose 4,6-dehydratase | - |
| MPG30_RS00755 (MPG30_00755) | - | 159517..160449 (+) | 933 | WP_245047887.1 | GDP-L-fucose synthase | - |
| MPG30_RS00760 (MPG30_00760) | hypE | 160699..161697 (-) | 999 | WP_245047893.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42164.80 Da Isoelectric Point: 9.9312
>NTDB_id=667301 MPG30_RS00740 WP_245047881.1 155747..156883(+) (comB10) [Helicobacter pylori strain Hpfe052]
MNKWIKGALVFVGGFAMIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTHPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGALVFVGGFAMIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKSPPIDLKANTTHPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667301 MPG30_RS00740 WP_245047881.1 155747..156883(+) (comB10) [Helicobacter pylori strain Hpfe052]
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAATGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCTCTAAATAACCAACCCAACCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCATCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCTGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAATGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAATGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCTCTAAATAACCAACCCAACCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCATCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCTGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAATGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.767 |
100 |
0.958 |