Detailed information NTG0667300

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG30_RS00735
• Genome accession: NZ_CP094131
• Coordinates: 154795..155754 (+)
• Length: 319 a.a.
• NCBI ID: WP_245047879.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe052
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149795..160754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG30_RS00705 (MPG30_00705)	panD	151213..151566 (+)	354	WP_021307646.1	aspartate 1-decarboxylase	-
MPG30_RS00710 (MPG30_00710)	-	151569..151862 (+)	294	WP_131128566.1	YbaB/EbfC family nucleoid-associated protein	-
MPG30_RS00715 (MPG30_00715)	-	151862..152857 (+)	996	WP_245048345.1	PDZ domain-containing protein	-
MPG30_RS00720 (MPG30_00720)	comB6	152865..153920 (+)	1056	WP_231192655.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG30_RS00725 (MPG30_00725)	comB7	153936..154061 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG30_RS00730 (MPG30_00730)	comB8	154058..154795 (+)	738	WP_058337650.1	virB8 family protein	Machinery gene
MPG30_RS00735 (MPG30_00735)	comB9	154795..155754 (+)	960	WP_245047879.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG30_RS00740 (MPG30_00740)	comB10	155747..156883 (+)	1137	WP_245047881.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG30_RS00745 (MPG30_00745)	-	156953..158365 (+)	1413	WP_245047883.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG30_RS00750 (MPG30_00750)	gmd	158379..159524 (+)	1146	WP_245047885.1	GDP-mannose 4,6-dehydratase	-
MPG30_RS00755 (MPG30_00755)	-	159517..160449 (+)	933	WP_245047887.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36728.38 Da
• Isoelectric Point: 9.4938

>NTDB_id=667300 MPG30_RS00735 WP_245047879.1 154795..155754(+) (comB9) [Helicobacter pylori strain Hpfe052]
MRKVLCTLVGFLLVFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKALTNNKPLKEEKEETKEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSKL
SLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 960 bp

>NTDB_id=667300 MPG30_RS00735 WP_245047879.1 154795..155754(+) (comB9) [Helicobacter pylori strain Hpfe052]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATTTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAGACA
TTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTC
TCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATT
CCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTGAAG
ATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGCTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.947