Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG30_RS00730 Genome accession   NZ_CP094131
Coordinates   154058..154795 (+) Length   245 a.a.
NCBI ID   WP_058337650.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe052     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149058..159795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG30_RS00705 (MPG30_00705) panD 151213..151566 (+) 354 WP_021307646.1 aspartate 1-decarboxylase -
  MPG30_RS00710 (MPG30_00710) - 151569..151862 (+) 294 WP_131128566.1 YbaB/EbfC family nucleoid-associated protein -
  MPG30_RS00715 (MPG30_00715) - 151862..152857 (+) 996 WP_245048345.1 PDZ domain-containing protein -
  MPG30_RS00720 (MPG30_00720) comB6 152865..153920 (+) 1056 WP_231192655.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG30_RS00725 (MPG30_00725) comB7 153936..154061 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG30_RS00730 (MPG30_00730) comB8 154058..154795 (+) 738 WP_058337650.1 virB8 family protein Machinery gene
  MPG30_RS00735 (MPG30_00735) comB9 154795..155754 (+) 960 WP_245047879.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG30_RS00740 (MPG30_00740) comB10 155747..156883 (+) 1137 WP_245047881.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG30_RS00745 (MPG30_00745) - 156953..158365 (+) 1413 WP_245047883.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG30_RS00750 (MPG30_00750) gmd 158379..159524 (+) 1146 WP_245047885.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28502.69 Da        Isoelectric Point: 8.9546

>NTDB_id=667299 MPG30_RS00730 WP_058337650.1 154058..154795(+) (comB8) [Helicobacter pylori strain Hpfe052]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667299 MPG30_RS00730 WP_058337650.1 154058..154795(+) (comB8) [Helicobacter pylori strain Hpfe052]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCAGTTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCACTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTACAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.951

100

0.967

Multiple sequence alignment