Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R37_RS18735 Genome accession   NZ_AP022207
Coordinates   3872822..3873427 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WP7-S18-ESBL-09     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3867822..3878427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R37_RS18715 (WP7S18E09_36300) aes 3867963..3868922 (+) 960 WP_000801805.1 acetyl esterase -
  H7R37_RS18720 (WP7S18E09_36310) hemH 3868919..3869881 (-) 963 WP_001250117.1 ferrochelatase -
  H7R37_RS18725 (WP7S18E09_36320) adk 3870013..3870657 (-) 645 WP_001220233.1 adenylate kinase -
  H7R37_RS18730 (WP7S18E09_36330) htpG 3870838..3872712 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7R37_RS18735 (WP7S18E09_36340) recR 3872822..3873427 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R37_RS18740 (WP7S18E09_36350) ybaB 3873427..3873756 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R37_RS18745 (WP7S18E09_36360) dnaX 3873809..3875740 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  H7R37_RS18750 (WP7S18E09_36370) apt 3875869..3876420 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R37_RS18755 (WP7S18E09_36380) ybaN 3876573..3876950 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R37_RS18760 (WP7S18E09_36390) priC 3877020..3877547 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  H7R37_RS18765 (WP7S18E09_36400) rsmS 3877561..3877725 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=66725 H7R37_RS18735 WP_001195025.1 3872822..3873427(-) (recR) [Escherichia coli strain WP7-S18-ESBL-09]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=66725 H7R37_RS18735 WP_001195025.1 3872822..3873427(-) (recR) [Escherichia coli strain WP7-S18-ESBL-09]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment