Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAJPND1_RS10170 | Genome accession | NZ_AP014652 |
| Coordinates | 2024401..2024871 (-) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain TMUS2126 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1995125..2047458 | 2024401..2024871 | within | 0 |
Gene organization within MGE regions
Location: 1995125..2047458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAJPND1_RS09960 (AXW71_RS09950) | scn | 1995125..1995465 (-) | 341 | Protein_1886 | complement inhibitor SCIN-A | - |
| SAJPND1_RS09965 (AXW71_RS09955) | - | 1996148..1996597 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| SAJPND1_RS09970 (SAJPND1_01929) | - | 1996692..1997027 (-) | 336 | Protein_1888 | SH3 domain-containing protein | - |
| SAJPND1_RS09980 (AXW71_RS09965) | sak | 1997677..1998168 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| SAJPND1_RS09985 (AXW71_RS09970) | - | 1998359..1999114 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| SAJPND1_RS09990 (AXW71_RS09975) | - | 1999126..1999380 (-) | 255 | WP_000611512.1 | phage holin | - |
| SAJPND1_RS09995 (AXW71_RS09980) | - | 1999432..1999539 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| SAJPND1_RS10000 (AXW71_RS14445) | pepG1 | 1999592..1999726 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| SAJPND1_RS10005 (AXW71_RS09985) | - | 1999918..2000214 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| SAJPND1_RS10010 (AXW71_RS09990) | - | 2000272..2000559 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| SAJPND1_RS10015 (AXW71_RS09995) | - | 2000606..2000758 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| SAJPND1_RS10020 (AXW71_RS10000) | - | 2000748..2004533 (-) | 3786 | WP_000582165.1 | phage tail spike protein | - |
| SAJPND1_RS10025 (AXW71_RS10005) | - | 2004549..2006033 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| SAJPND1_RS10030 (AXW71_RS10010) | - | 2006030..2010559 (-) | 4530 | WP_001796452.1 | phage tail tape measure protein | - |
| SAJPND1_RS14195 (SAJPND1_01941) | - | 2010616..2010750 (-) | 135 | WP_000364140.1 | hypothetical protein | - |
| SAJPND1_RS10035 (AXW71_RS10015) | - | 2010804..2011154 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| SAJPND1_RS10040 (AXW71_RS14450) | - | 2011204..2011434 (-) | 231 | Protein_1902 | Ig-like domain-containing protein | - |
| SAJPND1_RS10045 (AXW71_RS10020) | - | 2011470..2012114 (-) | 645 | WP_000268733.1 | major tail protein | - |
| SAJPND1_RS10050 (AXW71_RS10025) | - | 2012115..2012522 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| SAJPND1_RS10055 (AXW71_RS10030) | - | 2012519..2012923 (-) | 405 | WP_000114227.1 | HK97 gp10 family phage protein | - |
| SAJPND1_RS10060 (AXW71_RS10035) | - | 2012920..2013282 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| SAJPND1_RS10065 (AXW71_RS10040) | - | 2013266..2013550 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| SAJPND1_RS10070 (AXW71_RS10045) | - | 2013540..2013823 (-) | 284 | Protein_1908 | hypothetical protein | - |
| SAJPND1_RS10075 (AXW71_RS10050) | - | 2013843..2014988 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| SAJPND1_RS10080 (AXW71_RS10055) | - | 2015012..2015749 (-) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| SAJPND1_RS10085 (AXW71_RS10060) | - | 2015733..2016920 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| SAJPND1_RS10090 (AXW71_RS10065) | - | 2016936..2018597 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| SAJPND1_RS10095 (AXW71_RS10070) | - | 2018594..2018938 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| SAJPND1_RS10100 (AXW71_RS10075) | - | 2019069..2019368 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| SAJPND1_RS10105 (AXW71_RS10080) | - | 2019600..2020016 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| SAJPND1_RS10110 (AXW71_RS10085) | - | 2020044..2020244 (-) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| SAJPND1_RS10115 (AXW71_RS10090) | - | 2020244..2020393 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| SAJPND1_RS10120 (AXW71_RS10095) | - | 2020390..2020776 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| SAJPND1_RS10125 (AXW71_RS10100) | - | 2020773..2020979 (-) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| SAJPND1_RS10130 (AXW71_RS10105) | - | 2020976..2021221 (-) | 246 | WP_001282074.1 | hypothetical protein | - |
| SAJPND1_RS10135 (AXW71_RS10110) | - | 2021258..2021794 (-) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| SAJPND1_RS14025 (SAJPND1_01964) | - | 2021787..2021957 (-) | 171 | WP_000714403.1 | hypothetical protein | - |
| SAJPND1_RS10140 (AXW71_RS10115) | - | 2021944..2022198 (-) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| SAJPND1_RS10145 (AXW71_RS10120) | - | 2022213..2022455 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| SAJPND1_RS10150 (AXW71_RS10125) | - | 2022459..2022827 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAJPND1_RS10155 (AXW71_RS10130) | - | 2022840..2023244 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SAJPND1_RS10160 (AXW71_RS10135) | - | 2023253..2023471 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| SAJPND1_RS10165 (AXW71_RS10140) | - | 2023478..2024371 (-) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| SAJPND1_RS10170 (AXW71_RS10145) | ssbA | 2024401..2024871 (-) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| SAJPND1_RS10175 (AXW71_RS10150) | - | 2024872..2025489 (-) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| SAJPND1_RS10180 (AXW71_RS10155) | - | 2025570..2026490 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| SAJPND1_RS10185 (AXW71_RS10160) | - | 2026492..2028435 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| SAJPND1_RS10190 (AXW71_RS14455) | - | 2028444..2028707 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| SAJPND1_RS10195 (AXW71_RS10165) | - | 2028716..2028976 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| SAJPND1_RS10200 (AXW71_RS10170) | - | 2028981..2029283 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| SAJPND1_RS10205 (AXW71_RS10175) | - | 2029378..2029539 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| SAJPND1_RS10210 (AXW71_RS10180) | - | 2029536..2029859 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| SAJPND1_RS10215 (AXW71_RS10185) | - | 2029914..2030294 (+) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| SAJPND1_RS10220 (AXW71_RS10190) | - | 2030281..2030478 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| SAJPND1_RS10225 (AXW71_RS10195) | - | 2030494..2031246 (-) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| SAJPND1_RS10230 (AXW71_RS10200) | - | 2031297..2031626 (+) | 330 | WP_000128907.1 | hypothetical protein | - |
| SAJPND1_RS10235 (AXW71_RS10205) | - | 2031615..2031830 (-) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| SAJPND1_RS10240 (AXW71_RS10210) | - | 2031827..2032108 (-) | 282 | WP_000854074.1 | helix-turn-helix transcriptional regulator | - |
| SAJPND1_RS10245 (AXW71_RS10215) | - | 2032105..2032278 (-) | 174 | WP_001801500.1 | hypothetical protein | - |
| SAJPND1_RS10250 (AXW71_RS10220) | - | 2032241..2032954 (+) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| SAJPND1_RS10255 (AXW71_RS10225) | - | 2032970..2033902 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| SAJPND1_RS10260 (AXW71_RS10230) | - | 2033908..2034249 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| SAJPND1_RS10265 (AXW71_RS10235) | - | 2034453..2034635 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| SAJPND1_RS10270 (AXW71_RS10240) | - | 2034735..2035199 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| SAJPND1_RS10275 (AXW71_RS10245) | - | 2035258..2036295 (+) | 1038 | WP_000857191.1 | site-specific integrase | - |
| SAJPND1_RS10280 (AXW71_RS10250) | sph | 2036346..2037176 (+) | 831 | Protein_1951 | sphingomyelin phosphodiesterase | - |
| SAJPND1_RS10285 (AXW71_RS10255) | lukG | 2037414..2038430 (-) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| SAJPND1_RS10290 (AXW71_RS10260) | lukH | 2038452..2039504 (-) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| SAJPND1_RS10295 (AXW71_RS10265) | - | 2040066..2041289 (+) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| SAJPND1_RS10300 (AXW71_RS10270) | - | 2041661..2042507 (-) | 847 | Protein_1955 | class I SAM-dependent methyltransferase | - |
| SAJPND1_RS10305 (AXW71_RS10275) | - | 2042569..2043480 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| SAJPND1_RS10310 (AXW71_RS10280) | - | 2043641..2044948 (+) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| SAJPND1_RS10315 (AXW71_RS10285) | groL | 2045482..2047098 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| SAJPND1_RS10320 (AXW71_RS10290) | groES | 2047174..2047458 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=66725 SAJPND1_RS10170 WP_000610648.1 2024401..2024871(-) (ssbA) [Staphylococcus aureus strain TMUS2126]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=66725 SAJPND1_RS10170 WP_000610648.1 2024401..2024871(-) (ssbA) [Staphylococcus aureus strain TMUS2126]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |